MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:78.0 nTPM
GTEx:28.0 nTPM
FANTOM5:119.0 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:16.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.2
2586 Male, age 75, left hemisphere 81.6
2411 Female, age 72, unknown 75.0
1830 Male, age 51, unknown 74.2
1870 Female, age 42, unknown 71.3
2019 Male, age 18, unknown 68.0
2828 Female, age 72, unknown 66.6
2666 Male, age 74, left hemisphere 65.5
1833 Male, age 53, unknown 65.1
1827 Male, age 72, unknown 58.9
2219 Male, age 76, both hemispheres 45.9
Dorsal raphe nucleus
nTPM: 58.9
2750 Male, age 76, both hemispheres 87.8
2047 Male, age 72, unknown 57.9
1828 Male, age 53, unknown 49.8
2298 Female, age 72, unknown 49.7
2016 Female, age 72, unknown 49.4
Inferior colliculus
nTPM: 45.5
1848 Female, age 42, unknown 48.1
1890 Male, age 53, unknown 47.8
2849 Male, age 72, unknown 45.2
2097 Female, age 72, unknown 40.7
Median raphe nucleus
nTPM: 62.6
2220 Male, age 76, midline 62.6
Periaquaductal grey, anterior
nTPM: 62.2
1947 Male, age 18, unknown 67.6
1795 Male, age 51, unknown 61.2
2502 Female, age 75, unknown 57.8
Periaquaductal grey, dorsal
nTPM: 42.8
2464 Female, age 72, unknown 52.9
1831 Male, age 72, unknown 41.1
1840 Male, age 53, unknown 39.4
2850 Male, age 76, both hemispheres 37.8
Periaquaductal grey, lateral
nTPM: 49.6
2053 Male, age 18, unknown 56.7
2272 Male, age 74, both hemispheres 48.7
2140 Male, age 76, both hemispheres 43.4
Pretectal area
nTPM: 53.6
2316 Male, age 76, right hemisphere 66.2
2007 Male, age 72, unknown 63.6
2825 Male, age 18, unknown 60.3
1815 Male, age 53, unknown 57.4
2407 Male, age 75, both hemispheres 56.0
2224 Female, age 72, unknown 51.1
1944 Female, age 72, unknown 49.5
2273 Male, age 74, both hemispheres 48.0
1816 Male, age 51, unknown 47.3
1817 Female, age 42, unknown 46.6
2667 Female, age 75, unknown 44.0
Red nucleus
nTPM: 78.0
2584 Male, age 75, left hemisphere 88.8
1904 Male, age 53, unknown 85.0
1865 Male, age 51, unknown 80.6
2588 Male, age 74, left hemisphere 80.0
2769 Male, age 72, unknown 79.7
2823 Male, age 76, right hemisphere 79.5
2227 Male, age 72, unknown 78.6
2725 Female, age 75, unknown 76.9
2503 Female, age 72, unknown 74.7
1821 Female, age 72, unknown 73.3
1954 Female, age 42, unknown 70.5
2785 Male, age 18, unknown 68.9
Substantia nigra
nTPM: 59.2
2409 Female, age 72, unknown 84.9
2583 Male, age 75, right hemisphere 64.0
1851 Male, age 51, unknown 63.4
2590 Female, age 75, unknown 62.1
1941 Male, age 53, unknown 61.3
1889 Female, age 72, unknown 57.0
1916 Female, age 42, unknown 56.6
2241 Male, age 72, unknown 51.5
2699 Male, age 18, unknown 45.8
2665 Male, age 74, both hemispheres 45.6
Superior colliculus
nTPM: 60.2
1913 Female, age 42, unknown 79.2
2668 Female, age 75, unknown 73.4
1995 Male, age 72, unknown 63.2
1796 Male, age 53, unknown 60.5
2261 Male, age 18, unknown 58.9
2587 Male, age 74, left hemisphere 57.7
1839 Male, age 51, unknown 57.4
1895 Male, age 76, right hemisphere 57.4
2664 Male, age 75, both hemispheres 48.5
2087 Female, age 72, unknown 45.4
Ventral tegmental area
nTPM: 64.2
2223 Female, age 72, unknown 82.9
2410 Female, age 72, unknown 65.4
2021 Male, age 53, unknown 60.8
2218 Male, age 76, both hemispheres 60.0
1942 Male, age 51, unknown 59.9
1915 Female, age 42, unknown 56.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.0
Samples: 139

Max nTPM: 69.6
Min nTPM: 10.7
Std nTPM: 9.2
Median nTPM: 26.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 54.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 51.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 50.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 46.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 45.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 44.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 42.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.0
FF:10158-103A5 76 years, female 119.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 6.9
Sample A Female 13.7
Sample B Female 9.5
Sample C Male 11.0
Sample D Male 6.9
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 17.8
Min nTPM: 7.5
Sample A Female 17.8
Sample B Female 7.5
Sample C Male 10.0
Sample D Male 7.9
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 9.0
Min nTPM: 6.7
Sample B Female 6.8
Sample C Male 9.0
Sample D Male 6.7
Superior colliculi
nTPM: 7.9
Samples: 4

Max nTPM: 9.7
Min nTPM: 5.1
Sample A Female 9.7
Sample B Female 5.1
Sample C Male 8.4
Sample D Male 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.4
Sample A Male 18.1
Sample B Male 14.4
Sample C Female 17.2
Sample D Female 17.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
1517 Antisense, RP_040420_01_C07, Mouse strain C57BL/6J (56 days, male) 1.0
1516 Antisense, RP_040420_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3

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