MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA Brain:20.6 nTPM
GTEx:9.9 nTPM
FANTOM5:17.8 Scaled Tags Per Million
Pig:16.4 nTPM
Mouse:21.9 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
2586 Male, age 75, left hemisphere 23.1
2666 Male, age 74, left hemisphere 18.0
2219 Male, age 76, both hemispheres 17.0
2411 Female, age 72, unknown 16.9
1827 Male, age 72, unknown 16.8
1830 Male, age 51, unknown 15.7
2828 Female, age 72, unknown 15.6
1833 Male, age 53, unknown 15.0
2019 Male, age 18, unknown 14.2
1870 Female, age 42, unknown 13.4
Dorsal raphe nucleus
nTPM: 17.2
2298 Female, age 72, unknown 20.3
1828 Male, age 53, unknown 17.8
2047 Male, age 72, unknown 17.5
2750 Male, age 76, both hemispheres 17.0
2016 Female, age 72, unknown 13.1
Inferior colliculus
nTPM: 17.2
2097 Female, age 72, unknown 19.9
2849 Male, age 72, unknown 18.3
1848 Female, age 42, unknown 16.8
1890 Male, age 53, unknown 13.7
Median raphe nucleus
nTPM: 19.5
2220 Male, age 76, midline 19.5
Periaquaductal grey, anterior
nTPM: 20.6
1795 Male, age 51, unknown 22.1
2502 Female, age 75, unknown 21.6
1947 Male, age 18, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 17.8
2464 Female, age 72, unknown 20.7
2850 Male, age 76, both hemispheres 19.9
1840 Male, age 53, unknown 15.7
1831 Male, age 72, unknown 14.7
Periaquaductal grey, lateral
nTPM: 17.7
2272 Male, age 74, both hemispheres 19.6
2140 Male, age 76, both hemispheres 19.5
2053 Male, age 18, unknown 14.2
Pretectal area
nTPM: 17.5
2224 Female, age 72, unknown 21.8
2316 Male, age 76, right hemisphere 21.1
1816 Male, age 51, unknown 19.8
2007 Male, age 72, unknown 19.8
2825 Male, age 18, unknown 17.5
1944 Female, age 72, unknown 16.9
2273 Male, age 74, both hemispheres 16.6
2667 Female, age 75, unknown 16.2
2407 Male, age 75, both hemispheres 15.1
1817 Female, age 42, unknown 14.8
1815 Male, age 53, unknown 13.4
Red nucleus
nTPM: 13.3
2785 Male, age 18, unknown 17.4
2769 Male, age 72, unknown 16.7
2584 Male, age 75, left hemisphere 15.3
2503 Female, age 72, unknown 15.2
2588 Male, age 74, left hemisphere 14.0
1904 Male, age 53, unknown 13.7
2227 Male, age 72, unknown 13.3
2823 Male, age 76, right hemisphere 12.8
1954 Female, age 42, unknown 12.0
1821 Female, age 72, unknown 10.2
2725 Female, age 75, unknown 10.2
1865 Male, age 51, unknown 8.5
Substantia nigra
nTPM: 11.9
2583 Male, age 75, right hemisphere 17.1
1941 Male, age 53, unknown 15.9
2590 Female, age 75, unknown 14.1
1916 Female, age 42, unknown 13.5
2665 Male, age 74, both hemispheres 12.8
1889 Female, age 72, unknown 12.3
2699 Male, age 18, unknown 12.1
1851 Male, age 51, unknown 10.5
2241 Male, age 72, unknown 8.7
2409 Female, age 72, unknown 2.3
Superior colliculus
nTPM: 16.0
1796 Male, age 53, unknown 19.0
2087 Female, age 72, unknown 18.1
2261 Male, age 18, unknown 17.2
2664 Male, age 75, both hemispheres 17.0
1839 Male, age 51, unknown 16.8
2668 Female, age 75, unknown 16.2
1913 Female, age 42, unknown 15.1
1995 Male, age 72, unknown 14.0
2587 Male, age 74, left hemisphere 13.7
1895 Male, age 76, right hemisphere 12.7
Ventral tegmental area
nTPM: 15.0
1942 Male, age 51, unknown 18.9
1915 Female, age 42, unknown 15.4
2021 Male, age 53, unknown 15.3
2218 Male, age 76, both hemispheres 14.9
2410 Female, age 72, unknown 13.1
2223 Female, age 72, unknown 12.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 32.1
Min nTPM: 0.9
Std nTPM: 5.4
Median nTPM: 9.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 32.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 21.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 21.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 21.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 20.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 19.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 18.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 18.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 18.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.8
FF:10158-103A5 76 years, female 17.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.8
Sample A Female 16.4
Sample B Female 14.7
Sample C Male 14.1
Sample D Male 13.8
Midbrain
nTPM: 16.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.4
Sample A Female 18.2
Sample B Female 12.4
Sample C Male 18.1
Sample D Male 16.7
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 14.7
Min nTPM: 12.7
Sample B Female 13.6
Sample C Male 14.7
Sample D Male 12.7
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.6
Sample A Female 17.6
Sample B Female 18.0
Sample C Male 13.6
Sample D Male 15.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 24.4
Min nTPM: 19.0
Sample A Male 22.3
Sample B Male 19.0
Sample C Female 21.7
Sample D Female 24.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69262258 Antisense, RP_050301_02_A06, Mouse strain C57BL/6J (56 days, male) 6.5

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