HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:26.8 nTPM
HPA Brain:20.1 nTPM
GTEx:26.8 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:60.9 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027634
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Hippocampus
nTPM: 19.3
1855 Male, age 76, left hemisphere 22.4
1898 Male, age 80, left hemisphere 20.0
2148 Female, age 91, left hemisphere 19.7
1911 Female, age 85, right hemisphere 19.1
2529 Female, age 94, left hemisphere 17.7
2621 Female, age 67, right hemisphere 16.8
Dentate gyrus
nTPM: 18.5
2010 Male, age 76, both hemispheres 21.5
2530 Female, age 94, left hemisphere 20.7
2528 Male, age 74, both hemispheres 19.8
2246 Female, age 85, both hemispheres 17.2
1927 Female, age 91, both hemispheres 16.8
2531 Female, age 67, both hemispheres 14.8
Entorhinal gyrus
nTPM: 18.6
2117 Female, age 91, right hemisphere 22.2
2613 Female, age 94, left hemisphere 20.0
1938 Female, age 85, left hemisphere 18.5
1787 Male, age 76, left hemisphere 18.2
2686 Male, age 75, right hemisphere 17.0
2764 Male, age 80, right hemisphere 15.7
Hippocampus, CA1
nTPM: 17.9
2045 Male, age 76, both hemispheres 18.8
2082 Female, age 91, right hemisphere 18.2
2749 Male, age 80, left hemisphere 18.0
1873 Female, age 85, both hemispheres 17.9
2527 Male, age 74, both hemispheres 16.6
Hippocampus, CA2
nTPM: 19.6
1940 Female, age 85, left hemisphere 21.9
1963 Male, age 80, left hemisphere 21.8
1892 Male, age 76, both hemispheres 19.2
2113 Female, age 91, right hemisphere 18.9
2437 Female, age 94, left hemisphere 18.7
2249 Male, age 74, both hemispheres 17.3
Hippocampus, CA3
nTPM: 18.1
1867 Male, age 76, both hemispheres 20.8
1891 Female, age 85, both hemispheres 20.6
2620 Female, age 94, left hemisphere 17.0
2861 Female, age 67, both hemispheres 17.0
2137 Male, age 80, left hemisphere 16.5
2436 Male, age 74, both hemispheres 16.5
Parahippocampal cortex
nTPM: 17.7
2018 Male, age 76, both hemispheres 20.6
2692 Male, age 74, both hemispheres 19.7
1990 Female, age 91, right hemisphere 19.0
1933 Female, age 85, both hemispheres 18.6
2532 Female, age 72, left hemisphere 18.0
2693 Female, age 94, both hemispheres 17.5
1850 Male, age 80, both hemispheres 16.9
2250 Female, age 67, right hemisphere 16.6
2245 Female, age 91, both hemispheres 15.9
2622 Female, age 67, right hemisphere 14.0
Perirhinal gyrus
nTPM: 16.2
2521 Female, age 94, right hemisphere 18.4
1841 Female, age 85, right hemisphere 17.4
2848 Male, age 76, right hemisphere 15.6
1847 Female, age 91, left hemisphere 15.5
1794 Male, age 80, right hemisphere 14.0
Subiculum
nTPM: 20.1
2042 Male, age 76, both hemispheres 24.7
2729 Female, age 91, right hemisphere 23.1
1977 Female, age 85, both hemispheres 19.7
1901 Male, age 80, both hemispheres 18.2
2619 Male, age 74, both hemispheres 18.0
2438 Female, age 94, left hemisphere 17.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.8
Samples: 197

Max nTPM: 48.4
Min nTPM: 12.5
Std nTPM: 6.7
Median nTPM: 25.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 48.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 46.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 45.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 44.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 43.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 42.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 42.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 42.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 41.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 39.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 38.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 69.6
FF:10153-102I9 76 years, female 77.9
FF:10169-103B7 60 years, female 61.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.1
Pig sample Sample description nTPM
Subiculum
nTPM: 24.3
Samples: 4

Max nTPM: 29.0
Min nTPM: 21.6
Sample A Female 29.0
Sample B Female 23.7
Sample C Male 21.6
Sample D Male 22.9
Dorsal hippocampus
nTPM: 29.1
Samples: 4

Max nTPM: 35.3
Min nTPM: 22.3
Sample A Female 35.3
Sample B Female 26.2
Sample C Male 32.7
Sample D Male 22.3
Entorhinal cortex
nTPM: 24.5
Samples: 4

Max nTPM: 27.6
Min nTPM: 21.0
Sample A Female 23.0
Sample B Female 27.6
Sample C Male 26.4
Sample D Male 21.0
Ventral hippocampus
nTPM: 26.4
Samples: 4

Max nTPM: 30.5
Min nTPM: 20.8
Sample A Female 26.3
Sample B Female 20.8
Sample C Male 30.5
Sample D Male 28.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 60.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 49.7
Samples: 4

Max nTPM: 51.9
Min nTPM: 46.5
Sample A Male 51.1
Sample B Male 49.4
Sample C Female 51.9
Sample D Female 46.5
Hippocampal formation
nTPM: 61.0
Samples: 4

Max nTPM: 67.0
Min nTPM: 55.2
Sample A Male 60.7
Sample B Male 55.2
Sample C Female 67.0
Sample D Female 60.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
69116877 Antisense, RP_050321_01_D01, Mouse strain C57BL/6J (56 days, male) 1.7

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