MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.6 nTPM
HPA Brain:27.2 nTPM
GTEx:31.6 nTPM
FANTOM5:136.0 Scaled Tags Per Million
Pig:36.0 nTPM
Mouse:43.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2019 Male, age 18, unknown 31.2
2666 Male, age 74, left hemisphere 27.8
2586 Male, age 75, left hemisphere 26.3
1830 Male, age 51, unknown 25.4
2411 Female, age 72, unknown 25.4
1870 Female, age 42, unknown 25.2
2828 Female, age 72, unknown 24.9
1833 Male, age 53, unknown 24.0
1827 Male, age 72, unknown 21.3
2219 Male, age 76, both hemispheres 15.4
Dorsal raphe nucleus
nTPM: 21.7
2750 Male, age 76, both hemispheres 25.9
2016 Female, age 72, unknown 22.5
1828 Male, age 53, unknown 21.1
2047 Male, age 72, unknown 19.5
2298 Female, age 72, unknown 19.4
Inferior colliculus
nTPM: 21.1
1890 Male, age 53, unknown 23.1
2097 Female, age 72, unknown 23.0
1848 Female, age 42, unknown 20.2
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 22.1
2220 Male, age 76, midline 22.1
Periaquaductal grey, anterior
nTPM: 23.3
1947 Male, age 18, unknown 25.3
2502 Female, age 75, unknown 22.8
1795 Male, age 51, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 21.3
2464 Female, age 72, unknown 24.9
1831 Male, age 72, unknown 21.6
2850 Male, age 76, both hemispheres 21.4
1840 Male, age 53, unknown 17.5
Periaquaductal grey, lateral
nTPM: 22.2
2140 Male, age 76, both hemispheres 25.2
2053 Male, age 18, unknown 20.7
2272 Male, age 74, both hemispheres 20.7
Pretectal area
nTPM: 23.5
2316 Male, age 76, right hemisphere 27.7
1815 Male, age 53, unknown 27.6
2007 Male, age 72, unknown 26.6
1817 Female, age 42, unknown 26.3
2407 Male, age 75, both hemispheres 24.5
1816 Male, age 51, unknown 23.8
1944 Female, age 72, unknown 22.7
2667 Female, age 75, unknown 20.8
2224 Female, age 72, unknown 20.5
2825 Male, age 18, unknown 19.3
2273 Male, age 74, both hemispheres 19.2
Red nucleus
nTPM: 27.2
1865 Male, age 51, unknown 30.9
1904 Male, age 53, unknown 30.9
2227 Male, age 72, unknown 29.0
2785 Male, age 18, unknown 28.1
2584 Male, age 75, left hemisphere 27.5
2769 Male, age 72, unknown 27.0
1954 Female, age 42, unknown 26.4
2503 Female, age 72, unknown 26.2
2823 Male, age 76, right hemisphere 26.1
1821 Female, age 72, unknown 26.0
2725 Female, age 75, unknown 25.3
2588 Male, age 74, left hemisphere 23.6
Substantia nigra
nTPM: 24.4
2583 Male, age 75, right hemisphere 28.0
2241 Male, age 72, unknown 26.8
2409 Female, age 72, unknown 26.4
2590 Female, age 75, unknown 26.3
1851 Male, age 51, unknown 24.8
2665 Male, age 74, both hemispheres 23.6
1941 Male, age 53, unknown 23.2
1889 Female, age 72, unknown 22.7
1916 Female, age 42, unknown 22.4
2699 Male, age 18, unknown 20.1
Superior colliculus
nTPM: 24.0
1913 Female, age 42, unknown 28.5
2668 Female, age 75, unknown 27.1
2261 Male, age 18, unknown 25.8
1995 Male, age 72, unknown 25.5
2587 Male, age 74, left hemisphere 23.4
2087 Female, age 72, unknown 23.3
2664 Male, age 75, both hemispheres 22.2
1839 Male, age 51, unknown 21.8
1895 Male, age 76, right hemisphere 21.4
1796 Male, age 53, unknown 21.3
Ventral tegmental area
nTPM: 22.9
2410 Female, age 72, unknown 24.5
2223 Female, age 72, unknown 23.8
2218 Male, age 76, both hemispheres 23.0
2021 Male, age 53, unknown 22.9
1942 Male, age 51, unknown 21.9
1915 Female, age 42, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.6
Samples: 139

Max nTPM: 54.3
Min nTPM: 14.8
Std nTPM: 7.8
Median nTPM: 30.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 54.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 54.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 50.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 48.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 47.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 46.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 45.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 43.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.0
FF:10158-103A5 76 years, female 136.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.0
Samples: 4

Max nTPM: 39.0
Min nTPM: 32.7
Sample A Female 36.9
Sample B Female 35.3
Sample C Male 32.7
Sample D Male 39.0
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 44.4
Min nTPM: 25.9
Sample A Female 44.4
Sample B Female 34.5
Sample C Male 28.2
Sample D Male 25.9
Periaqueductal gray
nTPM: 30.2
Samples: 3

Max nTPM: 32.4
Min nTPM: 26.5
Sample B Female 31.8
Sample C Male 32.4
Sample D Male 26.5
Superior colliculi
nTPM: 34.2
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.8
Sample A Female 39.1
Sample B Female 28.8
Sample C Male 34.5
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.1
Samples: 4

Max nTPM: 45.3
Min nTPM: 38.6
Sample A Male 44.6
Sample B Male 38.6
Sample C Female 43.9
Sample D Female 45.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69116877 Antisense, RP_050321_01_D01, Mouse strain C57BL/6J (56 days, male) 0.4

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