MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:469.1 nTPM
HPA Brain:1437.7 nTPM
GTEx:469.1 nTPM
FANTOM5:1362.1 Scaled Tags Per Million
Pig:867.6 nTPM
Mouse:1056.8 nTPM
Allen mouse:18.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1437.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1277.4
2666 Male, age 74, left hemisphere 1759.6
1827 Male, age 72, unknown 1407.7
2019 Male, age 18, unknown 1394.6
2586 Male, age 75, left hemisphere 1327.8
2828 Female, age 72, unknown 1277.3
2411 Female, age 72, unknown 1260.6
1870 Female, age 42, unknown 1252.8
1833 Male, age 53, unknown 1122.6
1830 Male, age 51, unknown 1107.2
2219 Male, age 76, both hemispheres 863.6
Dorsal raphe nucleus
nTPM: 1425.7
2298 Female, age 72, unknown 1852.3
2016 Female, age 72, unknown 1445.0
1828 Male, age 53, unknown 1388.5
2047 Male, age 72, unknown 1346.8
2750 Male, age 76, both hemispheres 1095.9
Inferior colliculus
nTPM: 1221.6
2097 Female, age 72, unknown 1433.1
1848 Female, age 42, unknown 1192.5
1890 Male, age 53, unknown 1158.3
2849 Male, age 72, unknown 1102.5
Median raphe nucleus
nTPM: 1148.9
2220 Male, age 76, midline 1148.9
Periaquaductal grey, anterior
nTPM: 1376.1
1947 Male, age 18, unknown 1526.9
1795 Male, age 51, unknown 1360.5
2502 Female, age 75, unknown 1240.7
Periaquaductal grey, dorsal
nTPM: 1288.2
1840 Male, age 53, unknown 1427.7
2850 Male, age 76, both hemispheres 1350.2
1831 Male, age 72, unknown 1289.1
2464 Female, age 72, unknown 1085.9
Periaquaductal grey, lateral
nTPM: 1407.1
2272 Male, age 74, both hemispheres 1632.1
2140 Male, age 76, both hemispheres 1354.8
2053 Male, age 18, unknown 1234.4
Pretectal area
nTPM: 1437.7
2273 Male, age 74, both hemispheres 1928.3
1817 Female, age 42, unknown 1566.7
1944 Female, age 72, unknown 1550.2
1816 Male, age 51, unknown 1503.1
2007 Male, age 72, unknown 1493.5
2667 Female, age 75, unknown 1486.9
2224 Female, age 72, unknown 1472.1
1815 Male, age 53, unknown 1408.7
2825 Male, age 18, unknown 1217.4
2407 Male, age 75, both hemispheres 1109.2
2316 Male, age 76, right hemisphere 1078.9
Red nucleus
nTPM: 1184.1
1821 Female, age 72, unknown 1441.6
2725 Female, age 75, unknown 1421.2
2785 Male, age 18, unknown 1272.6
2503 Female, age 72, unknown 1253.0
1954 Female, age 42, unknown 1204.7
1865 Male, age 51, unknown 1178.8
1904 Male, age 53, unknown 1155.8
2584 Male, age 75, left hemisphere 1124.2
2769 Male, age 72, unknown 1119.3
2227 Male, age 72, unknown 1085.7
2823 Male, age 76, right hemisphere 1035.5
2588 Male, age 74, left hemisphere 916.4
Substantia nigra
nTPM: 1411.3
1916 Female, age 42, unknown 1910.6
1851 Male, age 51, unknown 1658.6
1889 Female, age 72, unknown 1435.5
1941 Male, age 53, unknown 1434.6
2241 Male, age 72, unknown 1393.8
2583 Male, age 75, right hemisphere 1362.8
2409 Female, age 72, unknown 1293.0
2699 Male, age 18, unknown 1292.1
2590 Female, age 75, unknown 1286.5
2665 Male, age 74, both hemispheres 1045.3
Superior colliculus
nTPM: 1274.5
1796 Male, age 53, unknown 1446.7
1995 Male, age 72, unknown 1403.3
2087 Female, age 72, unknown 1374.9
2261 Male, age 18, unknown 1353.3
2587 Male, age 74, left hemisphere 1297.5
1913 Female, age 42, unknown 1264.0
2668 Female, age 75, unknown 1200.8
1839 Male, age 51, unknown 1173.2
2664 Male, age 75, both hemispheres 1139.7
1895 Male, age 76, right hemisphere 1091.6
Ventral tegmental area
nTPM: 1366.3
1915 Female, age 42, unknown 1701.0
2410 Female, age 72, unknown 1470.7
1942 Male, age 51, unknown 1330.5
2021 Male, age 53, unknown 1266.8
2223 Female, age 72, unknown 1227.6
2218 Male, age 76, both hemispheres 1201.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 469.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 469.1
Samples: 139

Max nTPM: 882.5
Min nTPM: 79.2
Std nTPM: 179.1
Median nTPM: 457.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 882.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 873.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 872.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 863.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 860.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 850.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 826.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 808.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 797.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 782.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 757.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1362.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1362.1
FF:10158-103A5 76 years, female 1362.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 867.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 841.2
Samples: 4

Max nTPM: 1016.1
Min nTPM: 698.4
Sample A Female 1016.1
Sample B Female 698.4
Sample C Male 899.2
Sample D Male 751.1
Midbrain
nTPM: 867.6
Samples: 4

Max nTPM: 1458.5
Min nTPM: 561.7
Sample A Female 1458.5
Sample B Female 631.7
Sample C Male 818.4
Sample D Male 561.7
Periaqueductal gray
nTPM: 800.1
Samples: 3

Max nTPM: 963.5
Min nTPM: 700.4
Sample B Female 736.4
Sample C Male 963.5
Sample D Male 700.4
Superior colliculi
nTPM: 800.4
Samples: 4

Max nTPM: 853.5
Min nTPM: 705.7
Sample A Female 853.5
Sample B Female 810.1
Sample C Male 832.1
Sample D Male 705.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1056.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1056.9
Samples: 4

Max nTPM: 1074.4
Min nTPM: 1046.1
Sample A Male 1051.7
Sample B Male 1046.1
Sample C Female 1055.2
Sample D Female 1074.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.1
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 22.0
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 14.2
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 12.7

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