MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA Brain:45.4 nTPM
GTEx:48.4 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:83.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.9
2411 Female, age 72, unknown 42.8
1827 Male, age 72, unknown 39.6
1870 Female, age 42, unknown 39.0
2828 Female, age 72, unknown 36.8
1833 Male, age 53, unknown 35.1
2586 Male, age 75, left hemisphere 32.3
1830 Male, age 51, unknown 31.1
2019 Male, age 18, unknown 28.1
2666 Male, age 74, left hemisphere 27.8
2219 Male, age 76, both hemispheres 26.5
Dorsal raphe nucleus
nTPM: 45.4
2298 Female, age 72, unknown 55.7
2016 Female, age 72, unknown 51.5
2047 Male, age 72, unknown 43.6
1828 Male, age 53, unknown 43.5
2750 Male, age 76, both hemispheres 32.5
Inferior colliculus
nTPM: 41.3
2097 Female, age 72, unknown 49.1
1848 Female, age 42, unknown 41.6
1890 Male, age 53, unknown 39.3
2849 Male, age 72, unknown 35.3
Median raphe nucleus
nTPM: 33.9
2220 Male, age 76, midline 33.9
Periaquaductal grey, anterior
nTPM: 36.1
1947 Male, age 18, unknown 36.7
1795 Male, age 51, unknown 35.8
2502 Female, age 75, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 43.3
1840 Male, age 53, unknown 51.7
2850 Male, age 76, both hemispheres 45.4
2464 Female, age 72, unknown 38.1
1831 Male, age 72, unknown 38.0
Periaquaductal grey, lateral
nTPM: 42.9
2053 Male, age 18, unknown 46.5
2140 Male, age 76, both hemispheres 44.3
2272 Male, age 74, both hemispheres 37.9
Pretectal area
nTPM: 40.4
2224 Female, age 72, unknown 47.4
2667 Female, age 75, unknown 45.7
2273 Male, age 74, both hemispheres 45.3
1944 Female, age 72, unknown 43.8
2825 Male, age 18, unknown 42.9
1816 Male, age 51, unknown 41.0
1817 Female, age 42, unknown 40.4
2316 Male, age 76, right hemisphere 37.3
1815 Male, age 53, unknown 35.7
2007 Male, age 72, unknown 34.6
2407 Male, age 75, both hemispheres 30.9
Red nucleus
nTPM: 34.7
1821 Female, age 72, unknown 47.5
2725 Female, age 75, unknown 38.3
2503 Female, age 72, unknown 37.7
1954 Female, age 42, unknown 37.6
2769 Male, age 72, unknown 36.8
2227 Male, age 72, unknown 35.4
1904 Male, age 53, unknown 35.1
2823 Male, age 76, right hemisphere 34.3
1865 Male, age 51, unknown 34.2
2588 Male, age 74, left hemisphere 30.6
2785 Male, age 18, unknown 25.8
2584 Male, age 75, left hemisphere 22.8
Substantia nigra
nTPM: 41.9
1916 Female, age 42, unknown 54.4
2699 Male, age 18, unknown 47.9
2241 Male, age 72, unknown 47.5
1851 Male, age 51, unknown 46.2
2409 Female, age 72, unknown 45.8
1889 Female, age 72, unknown 40.9
2590 Female, age 75, unknown 38.6
1941 Male, age 53, unknown 36.9
2665 Male, age 74, both hemispheres 33.8
2583 Male, age 75, right hemisphere 27.5
Superior colliculus
nTPM: 37.1
2261 Male, age 18, unknown 42.2
2087 Female, age 72, unknown 40.2
2587 Male, age 74, left hemisphere 39.1
1895 Male, age 76, right hemisphere 38.4
1995 Male, age 72, unknown 37.9
1796 Male, age 53, unknown 37.6
1839 Male, age 51, unknown 36.7
1913 Female, age 42, unknown 35.1
2664 Male, age 75, both hemispheres 32.9
2668 Female, age 75, unknown 31.3
Ventral tegmental area
nTPM: 40.3
1915 Female, age 42, unknown 47.4
2410 Female, age 72, unknown 45.1
2021 Male, age 53, unknown 41.0
1942 Male, age 51, unknown 38.2
2218 Male, age 76, both hemispheres 36.6
2223 Female, age 72, unknown 33.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.4
Samples: 139

Max nTPM: 86.2
Min nTPM: 26.1
Std nTPM: 10.3
Median nTPM: 47.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 86.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 81.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 74.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 73.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 68.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 68.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 66.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 65.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 65.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 64.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.2
Samples: 4

Max nTPM: 86.3
Min nTPM: 78.5
Sample A Male 86.3
Sample B Male 78.5
Sample C Female 82.1
Sample D Female 85.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
75988241 Antisense, RP_060606_02_E01, Mouse strain C57BL/6J (56 days, male) 1.4

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