MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA Brain:39.6 nTPM
GTEx:12.7 nTPM
FANTOM5:11.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.6
2019 Male, age 18, unknown 34.9
1870 Female, age 42, unknown 29.2
1827 Male, age 72, unknown 27.5
2828 Female, age 72, unknown 27.4
2666 Male, age 74, left hemisphere 27.0
2411 Female, age 72, unknown 25.9
1830 Male, age 51, unknown 25.2
2586 Male, age 75, left hemisphere 23.4
2219 Male, age 76, both hemispheres 22.7
1833 Male, age 53, unknown 22.5
Dorsal raphe nucleus
nTPM: 28.6
2298 Female, age 72, unknown 40.9
2750 Male, age 76, both hemispheres 30.0
2016 Female, age 72, unknown 29.9
1828 Male, age 53, unknown 24.1
2047 Male, age 72, unknown 18.1
Inferior colliculus
nTPM: 29.7
2097 Female, age 72, unknown 37.0
1890 Male, age 53, unknown 32.1
1848 Female, age 42, unknown 25.9
2849 Male, age 72, unknown 23.9
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Periaquaductal grey, anterior
nTPM: 29.8
2502 Female, age 75, unknown 34.8
1795 Male, age 51, unknown 32.0
1947 Male, age 18, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 29.9
2850 Male, age 76, both hemispheres 40.2
1831 Male, age 72, unknown 29.5
2464 Female, age 72, unknown 27.6
1840 Male, age 53, unknown 22.3
Periaquaductal grey, lateral
nTPM: 39.6
2272 Male, age 74, both hemispheres 47.8
2140 Male, age 76, both hemispheres 42.2
2053 Male, age 18, unknown 28.7
Pretectal area
nTPM: 35.7
1816 Male, age 51, unknown 45.3
2273 Male, age 74, both hemispheres 40.8
1944 Female, age 72, unknown 39.6
1815 Male, age 53, unknown 37.8
1817 Female, age 42, unknown 37.7
2224 Female, age 72, unknown 37.5
2007 Male, age 72, unknown 37.4
2316 Male, age 76, right hemisphere 37.3
2667 Female, age 75, unknown 28.9
2825 Male, age 18, unknown 25.3
2407 Male, age 75, both hemispheres 24.7
Red nucleus
nTPM: 33.1
2785 Male, age 18, unknown 42.7
1904 Male, age 53, unknown 41.7
2227 Male, age 72, unknown 40.6
2769 Male, age 72, unknown 38.4
1865 Male, age 51, unknown 37.7
2503 Female, age 72, unknown 33.6
2725 Female, age 75, unknown 33.1
1954 Female, age 42, unknown 30.9
1821 Female, age 72, unknown 29.9
2823 Male, age 76, right hemisphere 26.8
2584 Male, age 75, left hemisphere 23.7
2588 Male, age 74, left hemisphere 18.5
Substantia nigra
nTPM: 33.2
2590 Female, age 75, unknown 43.0
2665 Male, age 74, both hemispheres 40.6
2699 Male, age 18, unknown 33.8
2409 Female, age 72, unknown 33.0
1851 Male, age 51, unknown 32.8
1916 Female, age 42, unknown 31.4
2583 Male, age 75, right hemisphere 30.8
1889 Female, age 72, unknown 30.5
2241 Male, age 72, unknown 30.0
1941 Male, age 53, unknown 25.7
Superior colliculus
nTPM: 33.6
1796 Male, age 53, unknown 45.2
2087 Female, age 72, unknown 45.1
1913 Female, age 42, unknown 45.0
2261 Male, age 18, unknown 42.8
1995 Male, age 72, unknown 38.4
2587 Male, age 74, left hemisphere 36.3
2668 Female, age 75, unknown 24.0
1839 Male, age 51, unknown 22.4
1895 Male, age 76, right hemisphere 19.8
2664 Male, age 75, both hemispheres 17.3
Ventral tegmental area
nTPM: 34.2
2223 Female, age 72, unknown 39.5
2218 Male, age 76, both hemispheres 36.9
2021 Male, age 53, unknown 34.8
2410 Female, age 72, unknown 33.4
1942 Male, age 51, unknown 30.4
1915 Female, age 42, unknown 29.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.7
Samples: 139

Max nTPM: 34.1
Min nTPM: 3.7
Std nTPM: 6.3
Median nTPM: 11.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 34.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 34.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 33.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 30.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 26.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 25.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 24.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 23.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

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