MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA Brain:12.6 nTPM
GTEx:2.4 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:3.9 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.7
2586 Male, age 75, left hemisphere 12.7
2666 Male, age 74, left hemisphere 11.6
2828 Female, age 72, unknown 11.6
1827 Male, age 72, unknown 11.3
2219 Male, age 76, both hemispheres 10.7
2411 Female, age 72, unknown 10.3
1830 Male, age 51, unknown 10.1
1870 Female, age 42, unknown 9.5
2019 Male, age 18, unknown 9.4
1833 Male, age 53, unknown 9.3
Dorsal raphe nucleus
nTPM: 9.2
2750 Male, age 76, both hemispheres 9.8
2047 Male, age 72, unknown 9.7
1828 Male, age 53, unknown 8.8
2016 Female, age 72, unknown 8.8
2298 Female, age 72, unknown 8.7
Inferior colliculus
nTPM: 9.5
2097 Female, age 72, unknown 9.8
1848 Female, age 42, unknown 9.5
1890 Male, age 53, unknown 9.5
2849 Male, age 72, unknown 9.3
Median raphe nucleus
nTPM: 9.4
2220 Male, age 76, midline 9.4
Periaquaductal grey, anterior
nTPM: 12.6
2502 Female, age 75, unknown 13.6
1795 Male, age 51, unknown 12.3
1947 Male, age 18, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 9.2
1831 Male, age 72, unknown 10.1
2464 Female, age 72, unknown 10.1
1840 Male, age 53, unknown 8.9
2850 Male, age 76, both hemispheres 7.8
Periaquaductal grey, lateral
nTPM: 10.1
2053 Male, age 18, unknown 11.0
2140 Male, age 76, both hemispheres 9.9
2272 Male, age 74, both hemispheres 9.3
Pretectal area
nTPM: 10.5
2407 Male, age 75, both hemispheres 11.6
1816 Male, age 51, unknown 11.4
1815 Male, age 53, unknown 11.2
2007 Male, age 72, unknown 11.1
2825 Male, age 18, unknown 10.9
1944 Female, age 72, unknown 10.3
2316 Male, age 76, right hemisphere 10.3
1817 Female, age 42, unknown 10.0
2224 Female, age 72, unknown 9.9
2667 Female, age 75, unknown 9.4
2273 Male, age 74, both hemispheres 8.9
Red nucleus
nTPM: 10.1
2588 Male, age 74, left hemisphere 12.4
2584 Male, age 75, left hemisphere 10.9
2823 Male, age 76, right hemisphere 10.6
1865 Male, age 51, unknown 10.2
2503 Female, age 72, unknown 10.0
2785 Male, age 18, unknown 9.9
1904 Male, age 53, unknown 9.8
1954 Female, age 42, unknown 9.8
2227 Male, age 72, unknown 9.7
2769 Male, age 72, unknown 9.7
2725 Female, age 75, unknown 9.6
1821 Female, age 72, unknown 8.3
Substantia nigra
nTPM: 9.4
2665 Male, age 74, both hemispheres 10.6
2590 Female, age 75, unknown 10.4
2583 Male, age 75, right hemisphere 10.2
1941 Male, age 53, unknown 9.6
1889 Female, age 72, unknown 9.4
1851 Male, age 51, unknown 9.2
1916 Female, age 42, unknown 9.0
2409 Female, age 72, unknown 8.8
2699 Male, age 18, unknown 8.6
2241 Male, age 72, unknown 8.3
Superior colliculus
nTPM: 10.7
2664 Male, age 75, both hemispheres 13.1
2261 Male, age 18, unknown 12.4
1796 Male, age 53, unknown 11.5
2587 Male, age 74, left hemisphere 10.6
1913 Female, age 42, unknown 10.4
2087 Female, age 72, unknown 10.4
2668 Female, age 75, unknown 10.3
1995 Male, age 72, unknown 10.0
1839 Male, age 51, unknown 9.8
1895 Male, age 76, right hemisphere 8.9
Ventral tegmental area
nTPM: 9.6
1942 Male, age 51, unknown 10.3
2021 Male, age 53, unknown 10.1
2223 Female, age 72, unknown 9.7
2218 Male, age 76, both hemispheres 9.6
2410 Female, age 72, unknown 9.6
1915 Female, age 42, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.4
Samples: 139

Max nTPM: 4.3
Min nTPM: 1.3
Std nTPM: 0.5
Median nTPM: 2.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 4.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 3.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 3.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 3.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 3.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 3.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 3.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 3.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 3.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 3.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.3
FF:10158-103A5 76 years, female 13.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.5
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 3.3
Sample C Male 3.9
Sample D Male 3.6
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.3
Sample A Female 3.8
Sample B Female 3.3
Sample C Male 4.3
Sample D Male 4.0
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 4.0
Min nTPM: 3.7
Sample B Female 3.8
Sample C Male 4.0
Sample D Male 3.7
Superior colliculi
nTPM: 3.9
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 4.2
Sample C Male 3.7
Sample D Male 3.9

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