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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
15841.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 15841.5
Samples: 152
Max nTPM: 64951.3
Min nTPM: 89.2
Std nTPM: 12532.0
Median nTPM: 11209.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
64951.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
59819.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
55274.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
51444.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
44305.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
41914.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
41783.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
39782.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
39696.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
38900.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
38699.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
38193.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
37783.0
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
37052.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
35334.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
34442.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
33938.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
33703.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
33347.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
32541.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
32359.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
32053.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
31793.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
31270.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
29277.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
26556.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
26022.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
25869.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
24315.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
24063.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
23872.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
23377.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
22800.1
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
22415.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
22360.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
21999.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
21204.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
20666.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
20010.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
19901.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
19840.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
19832.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
19266.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
19137.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
18835.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
18445.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
18225.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
17865.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
17753.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
17683.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
17506.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
17162.1
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
17137.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
16878.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
16865.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
16520.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
16283.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
15844.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
15817.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
14983.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
14960.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
14700.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
14445.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
13847.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
13804.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
13679.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
13399.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
13093.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
12976.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
12668.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
12638.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
12555.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
12149.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
11781.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
11717.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
11709.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
10708.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
10690.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
10495.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
9997.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
9881.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
9776.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
9774.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
9657.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
9523.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
9447.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
9367.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
9276.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
9038.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
9036.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
8973.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
8969.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
8862.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
8854.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
8781.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
8697.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
8568.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
8461.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
8439.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
8323.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
8298.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
7980.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
7610.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
7478.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
7465.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
7224.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
7150.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
7007.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
6962.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
6948.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
6870.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
6674.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
6635.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
6415.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
6413.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
6388.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
6290.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
6255.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
6174.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
5932.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
5889.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
5741.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
5710.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
5659.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
5522.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
5360.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
5346.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
5332.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
5314.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
5308.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
5270.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
5254.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
5246.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
5201.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
4928.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
4906.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
4775.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
4643.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
4642.3
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
4625.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
4566.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
4521.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
4476.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
4322.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
4317.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
4254.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
4076.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
4025.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
3837.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
3660.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
2197.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
89.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1502.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1502.7
Samples: 4
Max nTPM: 2630.2
Min nTPM: 1111.3
Sample A
Male
1111.3
Sample B
Male
1137.2
Sample C
Female
2630.2
Sample D
Female
1131.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.