MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.9 nTPM
HPA Brain:187.5 nTPM
GTEx:52.9 nTPM
FANTOM5:95.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 187.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.2
2586 Male, age 75, left hemisphere 261.1
2019 Male, age 18, unknown 200.8
2666 Male, age 74, left hemisphere 192.5
2828 Female, age 72, unknown 172.7
1827 Male, age 72, unknown 152.0
1870 Female, age 42, unknown 131.3
1830 Male, age 51, unknown 130.6
1833 Male, age 53, unknown 127.2
2411 Female, age 72, unknown 115.9
2219 Male, age 76, both hemispheres 98.2
Dorsal raphe nucleus
nTPM: 109.8
1828 Male, age 53, unknown 119.2
2016 Female, age 72, unknown 118.0
2047 Male, age 72, unknown 109.5
2298 Female, age 72, unknown 102.8
2750 Male, age 76, both hemispheres 99.7
Inferior colliculus
nTPM: 143.6
2849 Male, age 72, unknown 149.7
2097 Female, age 72, unknown 148.3
1848 Female, age 42, unknown 138.6
1890 Male, age 53, unknown 137.9
Median raphe nucleus
nTPM: 93.8
2220 Male, age 76, midline 93.8
Periaquaductal grey, anterior
nTPM: 187.5
1795 Male, age 51, unknown 189.6
1947 Male, age 18, unknown 187.4
2502 Female, age 75, unknown 185.6
Periaquaductal grey, dorsal
nTPM: 138.2
1840 Male, age 53, unknown 152.8
2464 Female, age 72, unknown 139.2
2850 Male, age 76, both hemispheres 136.1
1831 Male, age 72, unknown 124.9
Periaquaductal grey, lateral
nTPM: 135.5
2140 Male, age 76, both hemispheres 155.2
2053 Male, age 18, unknown 137.2
2272 Male, age 74, both hemispheres 114.2
Pretectal area
nTPM: 177.5
1817 Female, age 42, unknown 255.2
2007 Male, age 72, unknown 231.5
1816 Male, age 51, unknown 216.0
1944 Female, age 72, unknown 206.6
1815 Male, age 53, unknown 196.4
2407 Male, age 75, both hemispheres 186.3
2667 Female, age 75, unknown 169.4
2825 Male, age 18, unknown 130.2
2273 Male, age 74, both hemispheres 126.4
2316 Male, age 76, right hemisphere 122.1
2224 Female, age 72, unknown 112.2
Red nucleus
nTPM: 144.1
2785 Male, age 18, unknown 202.4
2584 Male, age 75, left hemisphere 175.3
2588 Male, age 74, left hemisphere 147.6
1865 Male, age 51, unknown 142.8
1904 Male, age 53, unknown 141.4
2503 Female, age 72, unknown 140.1
2725 Female, age 75, unknown 134.8
2769 Male, age 72, unknown 134.5
1954 Female, age 42, unknown 132.6
2227 Male, age 72, unknown 130.7
1821 Female, age 72, unknown 125.5
2823 Male, age 76, right hemisphere 121.7
Substantia nigra
nTPM: 119.2
2583 Male, age 75, right hemisphere 183.7
1889 Female, age 72, unknown 170.8
2590 Female, age 75, unknown 130.7
2665 Male, age 74, both hemispheres 123.9
1851 Male, age 51, unknown 108.5
2409 Female, age 72, unknown 104.6
1916 Female, age 42, unknown 98.5
2241 Male, age 72, unknown 95.4
1941 Male, age 53, unknown 94.6
2699 Male, age 18, unknown 81.0
Superior colliculus
nTPM: 166.4
2664 Male, age 75, both hemispheres 258.3
1995 Male, age 72, unknown 178.5
1796 Male, age 53, unknown 177.5
2087 Female, age 72, unknown 177.0
2261 Male, age 18, unknown 159.1
2668 Female, age 75, unknown 155.5
1913 Female, age 42, unknown 154.4
1839 Male, age 51, unknown 153.2
2587 Male, age 74, left hemisphere 137.7
1895 Male, age 76, right hemisphere 112.5
Ventral tegmental area
nTPM: 115.6
2223 Female, age 72, unknown 141.4
2410 Female, age 72, unknown 121.3
1942 Male, age 51, unknown 118.0
2021 Male, age 53, unknown 116.3
1915 Female, age 42, unknown 100.5
2218 Male, age 76, both hemispheres 95.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.9
Samples: 139

Max nTPM: 109.7
Min nTPM: 24.6
Std nTPM: 12.9
Median nTPM: 52.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 109.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 90.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 87.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 85.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 79.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 76.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 75.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 73.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 71.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 71.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 70.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.8
FF:10158-103A5 76 years, female 95.8

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