MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:41.1 nTPM
GTEx:11.7 nTPM
FANTOM5:9.6 Scaled Tags Per Million
Pig:9.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
2586 Male, age 75, left hemisphere 37.9
2828 Female, age 72, unknown 34.3
1827 Male, age 72, unknown 34.2
2666 Male, age 74, left hemisphere 32.3
2411 Female, age 72, unknown 32.0
1833 Male, age 53, unknown 31.8
2219 Male, age 76, both hemispheres 31.7
2019 Male, age 18, unknown 30.8
1830 Male, age 51, unknown 30.5
1870 Female, age 42, unknown 28.3
Dorsal raphe nucleus
nTPM: 34.8
2298 Female, age 72, unknown 39.6
2047 Male, age 72, unknown 38.9
2016 Female, age 72, unknown 36.5
1828 Male, age 53, unknown 30.5
2750 Male, age 76, both hemispheres 28.6
Inferior colliculus
nTPM: 31.8
1890 Male, age 53, unknown 34.2
2097 Female, age 72, unknown 31.3
1848 Female, age 42, unknown 30.9
2849 Male, age 72, unknown 30.6
Median raphe nucleus
nTPM: 35.1
2220 Male, age 76, midline 35.1
Periaquaductal grey, anterior
nTPM: 36.3
1947 Male, age 18, unknown 43.7
1795 Male, age 51, unknown 37.4
2502 Female, age 75, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 39.0
2850 Male, age 76, both hemispheres 43.3
1831 Male, age 72, unknown 40.3
1840 Male, age 53, unknown 39.7
2464 Female, age 72, unknown 32.6
Periaquaductal grey, lateral
nTPM: 41.1
2140 Male, age 76, both hemispheres 43.6
2272 Male, age 74, both hemispheres 42.6
2053 Male, age 18, unknown 37.0
Pretectal area
nTPM: 36.2
2273 Male, age 74, both hemispheres 42.0
2407 Male, age 75, both hemispheres 41.3
2667 Female, age 75, unknown 40.9
1816 Male, age 51, unknown 38.4
1815 Male, age 53, unknown 35.5
1944 Female, age 72, unknown 35.2
2007 Male, age 72, unknown 35.0
2224 Female, age 72, unknown 34.4
2825 Male, age 18, unknown 33.6
2316 Male, age 76, right hemisphere 31.6
1817 Female, age 42, unknown 29.8
Red nucleus
nTPM: 31.0
2588 Male, age 74, left hemisphere 36.6
2584 Male, age 75, left hemisphere 35.4
2725 Female, age 75, unknown 32.9
1904 Male, age 53, unknown 32.6
1865 Male, age 51, unknown 31.3
2823 Male, age 76, right hemisphere 30.7
2503 Female, age 72, unknown 30.6
2785 Male, age 18, unknown 30.5
1954 Female, age 42, unknown 29.3
2227 Male, age 72, unknown 29.2
2769 Male, age 72, unknown 27.6
1821 Female, age 72, unknown 25.6
Substantia nigra
nTPM: 34.6
2583 Male, age 75, right hemisphere 37.0
2699 Male, age 18, unknown 36.5
2241 Male, age 72, unknown 35.6
1941 Male, age 53, unknown 35.3
1851 Male, age 51, unknown 34.5
2409 Female, age 72, unknown 34.4
2590 Female, age 75, unknown 34.3
2665 Male, age 74, both hemispheres 33.4
1916 Female, age 42, unknown 33.3
1889 Female, age 72, unknown 31.9
Superior colliculus
nTPM: 32.6
2664 Male, age 75, both hemispheres 36.5
2087 Female, age 72, unknown 35.2
2668 Female, age 75, unknown 34.7
1895 Male, age 76, right hemisphere 32.8
1796 Male, age 53, unknown 32.1
1995 Male, age 72, unknown 32.0
2261 Male, age 18, unknown 31.8
2587 Male, age 74, left hemisphere 31.6
1913 Female, age 42, unknown 29.8
1839 Male, age 51, unknown 29.4
Ventral tegmental area
nTPM: 30.7
1942 Male, age 51, unknown 31.7
2218 Male, age 76, both hemispheres 30.8
1915 Female, age 42, unknown 30.7
2021 Male, age 53, unknown 30.4
2410 Female, age 72, unknown 30.4
2223 Female, age 72, unknown 29.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 139

Max nTPM: 23.0
Min nTPM: 4.9
Std nTPM: 3.5
Median nTPM: 11.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 22.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 20.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 20.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 19.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 19.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 18.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 17.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 17.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.6
FF:10158-103A5 76 years, female 9.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 7.9
Sample C Male 6.7
Sample D Male 10.6
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.3
Sample A Female 8.1
Sample B Female 9.2
Sample C Male 6.3
Sample D Male 9.1
Periaqueductal gray
nTPM: 9.3
Samples: 3

Max nTPM: 10.1
Min nTPM: 8.2
Sample B Female 9.6
Sample C Male 8.2
Sample D Male 10.1
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 7.3
Sample C Male 6.9
Sample D Male 7.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org