MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA Brain:30.3 nTPM
GTEx:33.2 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Mouse:14.6 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2828 Female, age 72, unknown 28.3
1833 Male, age 53, unknown 27.3
1830 Male, age 51, unknown 27.2
1870 Female, age 42, unknown 27.1
2666 Male, age 74, left hemisphere 26.9
2411 Female, age 72, unknown 25.6
2219 Male, age 76, both hemispheres 24.8
1827 Male, age 72, unknown 23.7
2586 Male, age 75, left hemisphere 19.2
2019 Male, age 18, unknown 18.6
Dorsal raphe nucleus
nTPM: 22.0
2016 Female, age 72, unknown 27.9
1828 Male, age 53, unknown 22.8
2750 Male, age 76, both hemispheres 21.6
2047 Male, age 72, unknown 19.1
2298 Female, age 72, unknown 18.7
Inferior colliculus
nTPM: 24.4
2849 Male, age 72, unknown 31.2
1848 Female, age 42, unknown 24.6
1890 Male, age 53, unknown 22.6
2097 Female, age 72, unknown 19.3
Median raphe nucleus
nTPM: 26.4
2220 Male, age 76, midline 26.4
Periaquaductal grey, anterior
nTPM: 23.2
2502 Female, age 75, unknown 28.3
1795 Male, age 51, unknown 21.0
1947 Male, age 18, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 30.3
2850 Male, age 76, both hemispheres 33.3
1831 Male, age 72, unknown 33.2
2464 Female, age 72, unknown 30.6
1840 Male, age 53, unknown 24.1
Periaquaductal grey, lateral
nTPM: 30.1
2140 Male, age 76, both hemispheres 37.6
2053 Male, age 18, unknown 27.6
2272 Male, age 74, both hemispheres 25.1
Pretectal area
nTPM: 25.5
2407 Male, age 75, both hemispheres 29.6
2825 Male, age 18, unknown 29.3
2224 Female, age 72, unknown 29.1
2273 Male, age 74, both hemispheres 27.8
2667 Female, age 75, unknown 25.6
1815 Male, age 53, unknown 25.5
1816 Male, age 51, unknown 24.6
1944 Female, age 72, unknown 23.5
2316 Male, age 76, right hemisphere 23.0
1817 Female, age 42, unknown 22.0
2007 Male, age 72, unknown 20.5
Red nucleus
nTPM: 23.7
2503 Female, age 72, unknown 30.3
1954 Female, age 42, unknown 26.5
2823 Male, age 76, right hemisphere 25.8
2725 Female, age 75, unknown 24.2
1904 Male, age 53, unknown 23.7
2769 Male, age 72, unknown 23.0
2227 Male, age 72, unknown 22.8
1821 Female, age 72, unknown 21.7
2584 Male, age 75, left hemisphere 21.7
1865 Male, age 51, unknown 21.6
2588 Male, age 74, left hemisphere 21.5
2785 Male, age 18, unknown 21.5
Substantia nigra
nTPM: 19.1
2699 Male, age 18, unknown 29.1
2665 Male, age 74, both hemispheres 21.1
2583 Male, age 75, right hemisphere 18.8
1889 Female, age 72, unknown 18.7
1941 Male, age 53, unknown 18.7
1851 Male, age 51, unknown 18.2
2590 Female, age 75, unknown 17.4
1916 Female, age 42, unknown 17.3
2241 Male, age 72, unknown 16.9
2409 Female, age 72, unknown 15.0
Superior colliculus
nTPM: 24.0
1995 Male, age 72, unknown 28.8
1839 Male, age 51, unknown 27.6
1913 Female, age 42, unknown 25.0
2087 Female, age 72, unknown 23.8
2261 Male, age 18, unknown 23.7
2664 Male, age 75, both hemispheres 23.7
2587 Male, age 74, left hemisphere 23.6
1895 Male, age 76, right hemisphere 23.5
1796 Male, age 53, unknown 20.6
2668 Female, age 75, unknown 20.1
Ventral tegmental area
nTPM: 22.3
2021 Male, age 53, unknown 29.1
2218 Male, age 76, both hemispheres 23.2
1942 Male, age 51, unknown 21.9
2223 Female, age 72, unknown 21.0
1915 Female, age 42, unknown 19.3
2410 Female, age 72, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 160.0
Min nTPM: 9.3
Std nTPM: 17.7
Median nTPM: 29.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 160.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 96.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 71.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 62.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 58.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 58.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 57.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 55.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 55.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 55.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 54.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 15.2
Min nTPM: 14.0
Sample A Male 14.4
Sample B Male 14.8
Sample C Female 14.0
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
73423729 Antisense, RP_051019_02_C01, Mouse strain C57BL/6J (56 days, male) 0.9

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