MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.0 nTPM
HPA Brain:25.9 nTPM
GTEx:25.0 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:31.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
2666 Male, age 74, left hemisphere 29.7
2586 Male, age 75, left hemisphere 29.0
2828 Female, age 72, unknown 26.7
2219 Male, age 76, both hemispheres 26.1
1870 Female, age 42, unknown 23.8
1827 Male, age 72, unknown 23.0
1830 Male, age 51, unknown 22.3
2019 Male, age 18, unknown 20.9
1833 Male, age 53, unknown 20.4
2411 Female, age 72, unknown 19.0
Dorsal raphe nucleus
nTPM: 24.1
2047 Male, age 72, unknown 27.6
2016 Female, age 72, unknown 26.5
1828 Male, age 53, unknown 23.9
2298 Female, age 72, unknown 22.0
2750 Male, age 76, both hemispheres 20.7
Inferior colliculus
nTPM: 23.9
1890 Male, age 53, unknown 24.5
2097 Female, age 72, unknown 24.3
1848 Female, age 42, unknown 23.8
2849 Male, age 72, unknown 22.9
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 24.4
2502 Female, age 75, unknown 28.5
1795 Male, age 51, unknown 23.5
1947 Male, age 18, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 25.9
1840 Male, age 53, unknown 28.6
2850 Male, age 76, both hemispheres 25.9
1831 Male, age 72, unknown 25.4
2464 Female, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 21.5
2053 Male, age 18, unknown 24.4
2140 Male, age 76, both hemispheres 21.2
2272 Male, age 74, both hemispheres 19.0
Pretectal area
nTPM: 22.8
1816 Male, age 51, unknown 25.1
1817 Female, age 42, unknown 25.1
1944 Female, age 72, unknown 25.0
1815 Male, age 53, unknown 24.8
2825 Male, age 18, unknown 24.3
2407 Male, age 75, both hemispheres 24.1
2224 Female, age 72, unknown 23.9
2007 Male, age 72, unknown 22.6
2667 Female, age 75, unknown 21.3
2273 Male, age 74, both hemispheres 18.4
2316 Male, age 76, right hemisphere 16.0
Red nucleus
nTPM: 22.5
1865 Male, age 51, unknown 24.4
2503 Female, age 72, unknown 24.4
2584 Male, age 75, left hemisphere 24.2
1954 Female, age 42, unknown 23.1
1821 Female, age 72, unknown 22.7
1904 Male, age 53, unknown 22.7
2769 Male, age 72, unknown 22.7
2227 Male, age 72, unknown 21.9
2588 Male, age 74, left hemisphere 21.8
2785 Male, age 18, unknown 20.9
2725 Female, age 75, unknown 20.7
2823 Male, age 76, right hemisphere 20.5
Substantia nigra
nTPM: 22.2
2665 Male, age 74, both hemispheres 28.2
2699 Male, age 18, unknown 25.4
2583 Male, age 75, right hemisphere 23.1
1916 Female, age 42, unknown 22.2
1889 Female, age 72, unknown 21.6
1851 Male, age 51, unknown 21.2
2409 Female, age 72, unknown 20.9
1941 Male, age 53, unknown 20.4
2590 Female, age 75, unknown 19.6
2241 Male, age 72, unknown 19.1
Superior colliculus
nTPM: 23.9
2664 Male, age 75, both hemispheres 33.1
1995 Male, age 72, unknown 26.3
2668 Female, age 75, unknown 25.9
1913 Female, age 42, unknown 24.6
2587 Male, age 74, left hemisphere 23.6
2261 Male, age 18, unknown 23.3
2087 Female, age 72, unknown 23.1
1839 Male, age 51, unknown 21.2
1796 Male, age 53, unknown 20.9
1895 Male, age 76, right hemisphere 17.1
Ventral tegmental area
nTPM: 22.8
2223 Female, age 72, unknown 26.2
2021 Male, age 53, unknown 25.8
1942 Male, age 51, unknown 24.0
2410 Female, age 72, unknown 21.0
1915 Female, age 42, unknown 20.9
2218 Male, age 76, both hemispheres 18.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.0
Samples: 139

Max nTPM: 44.8
Min nTPM: 12.0
Std nTPM: 7.0
Median nTPM: 24.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 44.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 44.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 43.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 43.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 40.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 37.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 37.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 36.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.4
FF:10158-103A5 76 years, female 17.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.6
Sample A Female 10.4
Sample B Female 9.3
Sample C Male 8.6
Sample D Male 10.6
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 15.1
Min nTPM: 8.7
Sample A Female 15.1
Sample B Female 8.7
Sample C Male 11.5
Sample D Male 11.9
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 10.0
Min nTPM: 9.1
Sample B Female 9.1
Sample C Male 10.0
Sample D Male 9.3
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 11.4
Min nTPM: 8.8
Sample A Female 11.4
Sample B Female 10.9
Sample C Male 8.8
Sample D Male 10.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.2
Samples: 4

Max nTPM: 35.3
Min nTPM: 28.2
Sample A Male 28.8
Sample B Male 28.2
Sample C Female 35.3
Sample D Female 32.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69290668 Antisense, RP_050407_04_E02, Mouse strain C57BL/6J (56 days, male) 0.4
70919161 Antisense, RP_050712_04_C10, Mouse strain C57BL/6J (56 days, male) 0.2

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