MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1328.0 nTPM
HPA Brain:297.3 nTPM
GTEx:1328.0 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:2347.4 nTPM
Mouse:999.6 nTPM
Allen mouse:11.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 297.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 253.1
2666 Male, age 74, left hemisphere 298.9
1870 Female, age 42, unknown 277.7
2411 Female, age 72, unknown 268.9
2019 Male, age 18, unknown 266.4
2828 Female, age 72, unknown 260.6
2586 Male, age 75, left hemisphere 251.7
1830 Male, age 51, unknown 240.4
1827 Male, age 72, unknown 230.3
1833 Male, age 53, unknown 218.4
2219 Male, age 76, both hemispheres 217.8
Dorsal raphe nucleus
nTPM: 268.6
2298 Female, age 72, unknown 295.0
2750 Male, age 76, both hemispheres 288.4
2016 Female, age 72, unknown 271.1
1828 Male, age 53, unknown 266.2
2047 Male, age 72, unknown 222.3
Inferior colliculus
nTPM: 253.4
2097 Female, age 72, unknown 297.0
1890 Male, age 53, unknown 281.1
1848 Female, age 42, unknown 225.3
2849 Male, age 72, unknown 210.0
Median raphe nucleus
nTPM: 247.7
2220 Male, age 76, midline 247.7
Periaquaductal grey, anterior
nTPM: 264.7
2502 Female, age 75, unknown 333.0
1795 Male, age 51, unknown 230.8
1947 Male, age 18, unknown 230.4
Periaquaductal grey, dorsal
nTPM: 235.2
1840 Male, age 53, unknown 258.3
2464 Female, age 72, unknown 249.3
1831 Male, age 72, unknown 229.6
2850 Male, age 76, both hemispheres 203.8
Periaquaductal grey, lateral
nTPM: 222.8
2053 Male, age 18, unknown 242.0
2140 Male, age 76, both hemispheres 237.7
2272 Male, age 74, both hemispheres 188.9
Pretectal area
nTPM: 234.7
2316 Male, age 76, right hemisphere 311.0
2224 Female, age 72, unknown 265.3
2825 Male, age 18, unknown 248.4
1817 Female, age 42, unknown 243.6
2007 Male, age 72, unknown 239.4
1815 Male, age 53, unknown 238.9
1816 Male, age 51, unknown 233.4
2667 Female, age 75, unknown 204.8
2407 Male, age 75, both hemispheres 202.1
1944 Female, age 72, unknown 199.9
2273 Male, age 74, both hemispheres 195.1
Red nucleus
nTPM: 288.4
2503 Female, age 72, unknown 337.5
1904 Male, age 53, unknown 319.0
1865 Male, age 51, unknown 317.2
1821 Female, age 72, unknown 316.5
2227 Male, age 72, unknown 306.2
2769 Male, age 72, unknown 301.8
2588 Male, age 74, left hemisphere 292.8
1954 Female, age 42, unknown 273.0
2785 Male, age 18, unknown 263.2
2823 Male, age 76, right hemisphere 249.2
2584 Male, age 75, left hemisphere 244.7
2725 Female, age 75, unknown 239.4
Substantia nigra
nTPM: 297.3
1851 Male, age 51, unknown 374.1
2241 Male, age 72, unknown 358.8
2409 Female, age 72, unknown 343.4
2665 Male, age 74, both hemispheres 339.6
2699 Male, age 18, unknown 313.2
1916 Female, age 42, unknown 293.3
2590 Female, age 75, unknown 271.9
1889 Female, age 72, unknown 269.0
1941 Male, age 53, unknown 221.7
2583 Male, age 75, right hemisphere 187.7
Superior colliculus
nTPM: 267.2
2587 Male, age 74, left hemisphere 303.1
2668 Female, age 75, unknown 302.5
1995 Male, age 72, unknown 298.0
1913 Female, age 42, unknown 293.5
1796 Male, age 53, unknown 271.3
2087 Female, age 72, unknown 261.4
2261 Male, age 18, unknown 246.5
2664 Male, age 75, both hemispheres 233.6
1839 Male, age 51, unknown 231.1
1895 Male, age 76, right hemisphere 230.6
Ventral tegmental area
nTPM: 279.6
1915 Female, age 42, unknown 323.4
2223 Female, age 72, unknown 303.7
2021 Male, age 53, unknown 292.5
2410 Female, age 72, unknown 269.6
1942 Male, age 51, unknown 264.4
2218 Male, age 76, both hemispheres 223.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1328.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1328.0
Samples: 139

Max nTPM: 4214.7
Min nTPM: 441.3
Std nTPM: 525.0
Median nTPM: 1209.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4214.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3038.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2869.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2776.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2537.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2396.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2346.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2264.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2228.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2110.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2015.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 2347.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2347.4
Samples: 4

Max nTPM: 2682.0
Min nTPM: 2150.1
Sample A Female 2682.0
Sample B Female 2378.1
Sample C Male 2179.4
Sample D Male 2150.1
Midbrain
nTPM: 2260.3
Samples: 4

Max nTPM: 2960.6
Min nTPM: 1768.3
Sample A Female 2960.6
Sample B Female 2516.1
Sample C Male 1796.1
Sample D Male 1768.3
Periaqueductal gray
nTPM: 2021.8
Samples: 3

Max nTPM: 2181.6
Min nTPM: 1941.4
Sample B Female 1941.4
Sample C Male 2181.6
Sample D Male 1942.5
Superior colliculi
nTPM: 2262.2
Samples: 4

Max nTPM: 2858.8
Min nTPM: 1795.6
Sample A Female 2858.8
Sample B Female 1795.6
Sample C Male 2219.6
Sample D Male 2174.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 999.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 999.6
Samples: 4

Max nTPM: 1100.7
Min nTPM: 904.8
Sample A Male 1100.7
Sample B Male 977.7
Sample C Female 904.8
Sample D Female 1015.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.5
100144177 Antisense, RP_110407_03_C10, Mouse strain C57BL/6J (56 days, male) 11.5

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