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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.1
nTPM
Monaco:
81.3
nTPM
Schmiedel:
64.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
21.1
HPA sample
nTPM
gdT-cell nTPM: 18.4
Samples: 6
Max nTPM: 26.7
Min nTPM: 12.8
P10809_1007
12.8
P10809_1022
26.7
P10809_1041
16.4
P10809_1060
17.2
P10809_1077
15.1
P10809_1098
21.9
MAIT T-cell nTPM: 21.1
Samples: 6
Max nTPM: 28.8
Min nTPM: 14.2
P10809_1006
14.2
P10809_1024
27.3
P10809_1043
18.8
P10809_1062
21.3
P10809_1083
16.0
P10809_1097
28.8
Memory CD4 T-cell nTPM: 17.9
Samples: 6
Max nTPM: 22.8
Min nTPM: 13.3
P10809_1014
14.3
P10809_1026
21.7
P10809_1045
22.8
P10809_1064
16.3
P10809_1086
13.3
P10809_1113
18.9
Memory CD8 T-cell nTPM: 15.8
Samples: 5
Max nTPM: 18.4
Min nTPM: 12.8
P10809_1012
15.5
P10809_1027
12.8
P10809_1046
18.4
P10809_1065
14.4
P10809_1111
17.7
Naive CD4 T-cell nTPM: 10.2
Samples: 6
Max nTPM: 15.9
Min nTPM: 6.7
P10809_1015
8.4
P10809_1030
9.6
P10809_1049
9.9
P10809_1068
6.7
P10809_1085
10.5
P10809_1112
15.9
Naive CD8 T-cell nTPM: 12.4
Samples: 6
Max nTPM: 16.9
Min nTPM: 8.5
P10809_1016
12.2
P10809_1031
8.5
P10809_1050
16.9
P10809_1069
10.4
P10809_1087
13.5
P10809_1110
12.9
T-reg nTPM: 20.9
Samples: 6
Max nTPM: 31.3
Min nTPM: 11.5
P10809_1018
23.6
P10809_1037
11.5
P10809_1056
31.3
P10809_1075
22.5
P10809_1094
15.5
P10809_1106
20.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
81.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 63.6
Samples: 4
Max nTPM: 77.4
Min nTPM: 49.3
RHH5202_R3573
67.6
RHH5230_R3602
49.3
RHH5259_R3631
60.0
RHH5288_R3660
77.4
Effector memory CD8 T-cell nTPM: 75.9
Samples: 4
Max nTPM: 83.5
Min nTPM: 67.2
RHH5203_R3574
83.0
RHH5231_R3603
83.5
RHH5260_R3632
69.7
RHH5289_R3661
67.2
MAIT T-cell nTPM: 72.3
Samples: 4
Max nTPM: 80.4
Min nTPM: 63.3
RHH5233_R3605
74.6
RHH5205_R3576
80.4
RHH5262_R3634
70.9
RHH5297_R3663
63.3
Memory CD4 T-cell TFH nTPM: 62.3
Samples: 4
Max nTPM: 71.3
Min nTPM: 57.9
RHH5300_R3666
71.3
RHH5236_R3608
57.9
RHH5265_R3637
58.2
RHH5208_R3579
61.8
Memory CD4 T-cell Th1 nTPM: 60.3
Samples: 4
Max nTPM: 66.1
Min nTPM: 53.6
RHH5210_R3581
58.6
RHH5302_R3668
62.9
RHH5238_R3610
53.6
RHH5267_R3639
66.1
Memory CD4 T-cell Th1/Th17 nTPM: 74.7
Samples: 4
Max nTPM: 76.2
Min nTPM: 72.8
RHH5303_R3669
72.8
RHH5211_R3582
74.8
RHH5239_R3611
76.2
RHH5268_R3640
75.0
Memory CD4 T-cell Th17 nTPM: 72.1
Samples: 4
Max nTPM: 80.6
Min nTPM: 59.3
RHH5304_R3670
78.9
RHH5212_R3583
80.6
RHH5240_R3612
69.7
RHH5269_R3641
59.3
Memory CD4 T-cell Th2 nTPM: 81.3
Samples: 4
Max nTPM: 88.5
Min nTPM: 71.1
RHH5305_R3671
77.2
RHH5213_R3584
88.5
RHH5241_R3613
88.2
RHH5270_R3642
71.1
Naive CD4 T-cell nTPM: 69.5
Samples: 4
Max nTPM: 77.7
Min nTPM: 59.9
RHH5306_R3672
59.9
RHH5214_R3585
63.0
RHH5242_R3614
77.5
RHH5271_R3643
77.7
Naive CD8 T-cell nTPM: 48.2
Samples: 4
Max nTPM: 59.9
Min nTPM: 30.7
RHH5201_R3572
59.9
RHH5229_R3601
30.7
RHH5258_R3630
56.2
RHH5287_R3659
46.1
Non-Vd2 gdTCR nTPM: 65.2
Samples: 4
Max nTPM: 83.4
Min nTPM: 45.5
RHH5235_R3607
67.8
RHH5264_R3636
63.9
RHH5207_R3578
83.4
RHH5299_R3665
45.5
T-reg nTPM: 65.3
Samples: 4
Max nTPM: 72.8
Min nTPM: 53.3
RHH5301_R3667
69.9
RHH5237_R3609
65.0
RHH5266_R3638
72.8
RHH5209_R3580
53.3
Terminal effector memory CD4 T-cell nTPM: 71.1
Samples: 2
Max nTPM: 71.4
Min nTPM: 70.8
RHH5243_R3615
71.4
RHH5272_R3644
70.8
Terminal effector memory CD8 T-cell nTPM: 73.4
Samples: 4
Max nTPM: 86.3
Min nTPM: 61.8
RHH5232_R3604
79.6
RHH5204_R3575
61.8
RHH5261_R3633
66.0
RHH5296_R3662
86.3
Vd2 gdTCR nTPM: 61.3
Samples: 4
Max nTPM: 73.0
Min nTPM: 51.5
RHH5234_R3606
53.4
RHH5206_R3577
67.3
RHH5263_R3635
51.5
RHH5298_R3664
73.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
