MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.9 nTPM
HPA Brain:15.5 nTPM
GTEx:0.9 nTPM
FANTOM5:2.7 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.6
2666 Male, age 74, left hemisphere 15.8
1830 Male, age 51, unknown 13.8
2019 Male, age 18, unknown 13.8
1833 Male, age 53, unknown 12.4
2828 Female, age 72, unknown 12.2
1870 Female, age 42, unknown 11.0
2411 Female, age 72, unknown 10.3
1827 Male, age 72, unknown 9.7
2586 Male, age 75, left hemisphere 9.1
2219 Male, age 76, both hemispheres 7.8
Dorsal raphe nucleus
nTPM: 12.6
2047 Male, age 72, unknown 16.4
2750 Male, age 76, both hemispheres 13.6
2016 Female, age 72, unknown 12.5
1828 Male, age 53, unknown 11.8
2298 Female, age 72, unknown 8.5
Inferior colliculus
nTPM: 12.0
1890 Male, age 53, unknown 13.1
2849 Male, age 72, unknown 12.5
1848 Female, age 42, unknown 11.8
2097 Female, age 72, unknown 10.5
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Periaquaductal grey, anterior
nTPM: 8.7
1947 Male, age 18, unknown 10.2
1795 Male, age 51, unknown 8.9
2502 Female, age 75, unknown 6.8
Periaquaductal grey, dorsal
nTPM: 11.8
2850 Male, age 76, both hemispheres 15.7
1831 Male, age 72, unknown 11.3
2464 Female, age 72, unknown 10.6
1840 Male, age 53, unknown 9.6
Periaquaductal grey, lateral
nTPM: 13.0
2140 Male, age 76, both hemispheres 18.1
2272 Male, age 74, both hemispheres 10.8
2053 Male, age 18, unknown 10.1
Pretectal area
nTPM: 10.4
2316 Male, age 76, right hemisphere 14.9
2667 Female, age 75, unknown 12.6
2407 Male, age 75, both hemispheres 11.2
2825 Male, age 18, unknown 10.4
2273 Male, age 74, both hemispheres 10.3
1815 Male, age 53, unknown 10.1
2224 Female, age 72, unknown 9.6
1817 Female, age 42, unknown 9.1
1944 Female, age 72, unknown 9.0
2007 Male, age 72, unknown 8.7
1816 Male, age 51, unknown 8.2
Red nucleus
nTPM: 12.8
2823 Male, age 76, right hemisphere 20.1
2785 Male, age 18, unknown 12.9
1954 Female, age 42, unknown 12.8
2584 Male, age 75, left hemisphere 12.7
2588 Male, age 74, left hemisphere 12.5
1904 Male, age 53, unknown 12.4
1865 Male, age 51, unknown 12.2
2227 Male, age 72, unknown 12.2
2503 Female, age 72, unknown 12.1
2769 Male, age 72, unknown 12.1
2725 Female, age 75, unknown 11.6
1821 Female, age 72, unknown 10.2
Substantia nigra
nTPM: 12.7
2241 Male, age 72, unknown 15.3
1916 Female, age 42, unknown 14.2
1941 Male, age 53, unknown 13.5
2583 Male, age 75, right hemisphere 13.5
2699 Male, age 18, unknown 13.4
2590 Female, age 75, unknown 12.8
2409 Female, age 72, unknown 12.7
1851 Male, age 51, unknown 11.8
2665 Male, age 74, both hemispheres 10.8
1889 Female, age 72, unknown 9.2
Superior colliculus
nTPM: 9.9
2087 Female, age 72, unknown 11.3
2587 Male, age 74, left hemisphere 11.0
1839 Male, age 51, unknown 10.9
2668 Female, age 75, unknown 10.6
1913 Female, age 42, unknown 9.7
2664 Male, age 75, both hemispheres 9.7
1796 Male, age 53, unknown 9.5
1895 Male, age 76, right hemisphere 9.5
1995 Male, age 72, unknown 8.8
2261 Male, age 18, unknown 7.5
Ventral tegmental area
nTPM: 12.6
2218 Male, age 76, both hemispheres 14.9
2021 Male, age 53, unknown 13.0
2223 Female, age 72, unknown 12.6
1942 Male, age 51, unknown 12.4
1915 Female, age 42, unknown 12.3
2410 Female, age 72, unknown 10.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.9
Samples: 139

Max nTPM: 3.7
Min nTPM: 0.2
Std nTPM: 0.5
Median nTPM: 0.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 3.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 2.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 2.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 2.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 1.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org