MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.0 nTPM
HPA Brain:154.5 nTPM
GTEx:51.0 nTPM
FANTOM5:126.4 Scaled Tags Per Million
Pig:36.4 nTPM
Mouse:73.1 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 154.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.2
1827 Male, age 72, unknown 140.0
2828 Female, age 72, unknown 139.1
1833 Male, age 53, unknown 124.7
1870 Female, age 42, unknown 123.8
2219 Male, age 76, both hemispheres 123.0
1830 Male, age 51, unknown 119.4
2586 Male, age 75, left hemisphere 116.7
2019 Male, age 18, unknown 113.2
2666 Male, age 74, left hemisphere 113.2
2411 Female, age 72, unknown 99.3
Dorsal raphe nucleus
nTPM: 138.9
1828 Male, age 53, unknown 166.2
2016 Female, age 72, unknown 152.4
2047 Male, age 72, unknown 141.6
2298 Female, age 72, unknown 129.3
2750 Male, age 76, both hemispheres 105.0
Inferior colliculus
nTPM: 147.3
1848 Female, age 42, unknown 170.3
2849 Male, age 72, unknown 161.8
1890 Male, age 53, unknown 128.6
2097 Female, age 72, unknown 128.6
Median raphe nucleus
nTPM: 110.8
2220 Male, age 76, midline 110.8
Periaquaductal grey, anterior
nTPM: 130.9
1947 Male, age 18, unknown 144.0
1795 Male, age 51, unknown 131.4
2502 Female, age 75, unknown 117.4
Periaquaductal grey, dorsal
nTPM: 154.5
2850 Male, age 76, both hemispheres 190.3
1840 Male, age 53, unknown 164.1
2464 Female, age 72, unknown 141.9
1831 Male, age 72, unknown 121.8
Periaquaductal grey, lateral
nTPM: 153.5
2140 Male, age 76, both hemispheres 187.4
2272 Male, age 74, both hemispheres 139.5
2053 Male, age 18, unknown 133.6
Pretectal area
nTPM: 148.1
2273 Male, age 74, both hemispheres 164.2
2667 Female, age 75, unknown 162.5
1817 Female, age 42, unknown 161.6
1944 Female, age 72, unknown 160.7
2224 Female, age 72, unknown 157.2
1816 Male, age 51, unknown 155.7
1815 Male, age 53, unknown 141.8
2825 Male, age 18, unknown 139.9
2316 Male, age 76, right hemisphere 138.8
2007 Male, age 72, unknown 136.0
2407 Male, age 75, both hemispheres 110.3
Red nucleus
nTPM: 130.1
2725 Female, age 75, unknown 162.8
1821 Female, age 72, unknown 156.9
2823 Male, age 76, right hemisphere 147.8
2503 Female, age 72, unknown 146.5
1954 Female, age 42, unknown 145.8
1904 Male, age 53, unknown 136.2
2227 Male, age 72, unknown 127.7
1865 Male, age 51, unknown 124.6
2769 Male, age 72, unknown 121.2
2588 Male, age 74, left hemisphere 109.6
2785 Male, age 18, unknown 107.0
2584 Male, age 75, left hemisphere 74.8
Substantia nigra
nTPM: 133.8
2699 Male, age 18, unknown 163.3
1916 Female, age 42, unknown 162.3
2241 Male, age 72, unknown 152.3
2409 Female, age 72, unknown 139.0
1851 Male, age 51, unknown 137.5
1889 Female, age 72, unknown 137.1
2665 Male, age 74, both hemispheres 120.0
2590 Female, age 75, unknown 112.1
1941 Male, age 53, unknown 111.7
2583 Male, age 75, right hemisphere 102.7
Superior colliculus
nTPM: 129.5
2087 Female, age 72, unknown 151.9
2261 Male, age 18, unknown 143.6
1895 Male, age 76, right hemisphere 141.7
1796 Male, age 53, unknown 136.3
1839 Male, age 51, unknown 133.0
2587 Male, age 74, left hemisphere 122.2
1995 Male, age 72, unknown 120.3
2668 Female, age 75, unknown 119.8
2664 Male, age 75, both hemispheres 114.3
1913 Female, age 42, unknown 111.8
Ventral tegmental area
nTPM: 116.0
2218 Male, age 76, both hemispheres 129.4
1915 Female, age 42, unknown 128.8
2410 Female, age 72, unknown 122.7
2021 Male, age 53, unknown 105.9
2223 Female, age 72, unknown 105.0
1942 Male, age 51, unknown 104.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.0
Samples: 139

Max nTPM: 122.2
Min nTPM: 17.3
Std nTPM: 17.9
Median nTPM: 49.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 122.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 98.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 95.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 93.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 89.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 86.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 85.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 85.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 84.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 83.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 80.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.4
FF:10158-103A5 76 years, female 126.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.4
Samples: 4

Max nTPM: 41.0
Min nTPM: 27.1
Sample A Female 41.0
Sample B Female 40.0
Sample C Male 37.6
Sample D Male 27.1
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 40.0
Min nTPM: 32.9
Sample A Female 34.9
Sample B Female 32.9
Sample C Male 40.0
Sample D Male 35.5
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 39.6
Min nTPM: 33.0
Sample B Female 33.0
Sample C Male 39.6
Sample D Male 35.1
Superior colliculi
nTPM: 36.0
Samples: 4

Max nTPM: 37.9
Min nTPM: 34.2
Sample A Female 34.2
Sample B Female 35.4
Sample C Male 37.9
Sample D Male 36.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.2
Samples: 4

Max nTPM: 80.1
Min nTPM: 66.2
Sample A Male 66.2
Sample B Male 73.3
Sample C Female 80.1
Sample D Female 73.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69169433 Antisense, RP_050321_03_E10, Mouse strain C57BL/6J (56 days, male) 0.9

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