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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
120.3
nTPM
FANTOM5:
198.0
Scaled Tags Per Million
Pig:
37.7
nTPM
Allen mouse:
1.1
Expression energy
PONS - HPA Brain RNA-seq
Max nTPM
120.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 94.3
1984
Male, age 76, both hemispheres
126.2
2301
Female, age 85, both hemispheres
87.6
2188
Female, age 91, both hemispheres
82.1
2090
Male, age 80, both hemispheres
81.2
Dorsal cochlear nucleus nTPM: 93.4
2058
Male, age 76, both hemispheres
108.3
2378
Male, age 80, both hemispheres
93.8
2187
Female, age 91, both hemispheres
89.6
2802
Male, age 74, right hemisphere
88.5
2370
Male, age 61, both hemispheres
87.1
Dorsal tegmental nucleus nTPM: 100.2
1936
Male, age 76, left hemisphere
111.1
2083
Male, age 80, both hemispheres
101.4
2326
Male, age 74, both hemispheres
101.2
2358
Male, age 61, both hemispheres
86.9
Dorsolateral tegmental area nTPM: 99.6
2141
Male, age 76, both hemispheres
112.8
2360
Male, age 74, both hemispheres
110.1
2654
Male, age 80, both hemispheres
100.0
2751
Female, age 85, both hemispheres
91.8
2337
Male, age 61, both hemispheres
83.0
Kolliker-Fuse nucleus nTPM: 108.0
2163
Male, age 80, both hemispheres
136.8
2315
Male, age 76, right hemisphere
112.7
2793
Female, age 91, left hemisphere
74.5
Lateral lemniscal nuclei nTPM: 82.1
2169
Male, age 76, both hemispheres
104.8
2746
Female, age 85, left hemisphere
86.6
2453
Male, age 74, right hemisphere
74.7
2036
Male, age 80, both hemispheres
72.3
2320
Female, age 91, left hemisphere
71.9
Lateral parabrachial nucleus nTPM: 95.6
2139
Female, age 85, right hemisphere
107.7
2792
Male, age 76, both hemispheres
103.2
2013
Male, age 80, both hemispheres
89.2
2790
Male, age 61, both hemispheres
82.2
Lateral vestibular nucleus nTPM: 120.3
2184
Male, age 76, both hemispheres
140.8
2311
Male, age 80, both hemispheres
99.8
Locus coeruleus nTPM: 106.9
2788
Male, age 74, unknown
135.3
2317
Female, age 72, unknown
109.7
2014
Male, age 55, unknown
107.7
2123
Female, age 91, both hemispheres
104.8
1980
Male, age 76, both hemispheres
101.5
2720
Male, age 74, both hemispheres
98.6
2162
Male, age 80, both hemispheres
90.7
Medial parabrachial nucleus nTPM: 96.4
2786
Male, age 76, both hemispheres
102.5
2156
Male, age 61, both hemispheres
98.9
2463
Female, age 85, right hemisphere
97.0
2854
Male, age 80, both hemispheres
92.4
2170
Female, age 91, both hemispheres
91.4
Medial periolivary nuclei nTPM: 84.8
2063
Male, age 76, both hemispheres
101.6
2171
Female, age 85, both hemispheres
94.6
2791
Male, age 74, right hemisphere
79.7
2458
Female, age 91, both hemispheres
75.1
2081
Male, age 80, both hemispheres
73.1
Motor facial nucleus nTPM: 85.2
2062
Male, age 76, both hemispheres
105.3
2795
Female, age 91, both hemispheres
99.5
2126
Male, age 61, both hemispheres
78.5
2327
Male, age 80, both hemispheres
78.5
2365
Male, age 74, right hemisphere
77.2
2697
Female, age 85, both hemispheres
72.5
Motor trigeminal nucleus nTPM: 80.6
2309
Male, age 76, both hemispheres
103.0
2335
Male, age 61, both hemispheres
80.5
2079
Male, age 80, both hemispheres
78.8
2321
Female, age 91, both hemispheres
73.2
2560
Male, age 74, both hemispheres
67.6
Nuclei of the trapezoid body nTPM: 88.4
1983
Male, age 76, both hemispheres
99.7
2159
Male, age 61, both hemispheres
94.3
2735
Female, age 85, both hemispheres
89.6
2368
Female, age 91, both hemispheres
81.4
2166
Male, age 80, both hemispheres
77.1
Nucleus raphe magnus nTPM: 87.6
2160
Male, age 61, both hemispheres
110.1
2051
Male, age 76, both hemispheres
90.3
2455
Male, age 74, both hemispheres
87.5
2328
Male, age 80, both hemispheres
84.9
2172
Female, age 85, both hemispheres
80.2
2459
Female, age 91, both hemispheres
72.8
Paramedian reticular nucleus nTPM: 94.6
2052
Male, age 76, both hemispheres
105.2
2050
Female, age 85, both hemispheres
95.2
2057
Male, age 80, both hemispheres
94.4
2313
Male, age 61, both hemispheres
83.6
Pedunculopontine tegmental nucleus nTPM: 113.6
1921
Female, age 85, both hemispheres
136.2
2334
Male, age 80, both hemispheres
105.0
2338
Male, age 61, both hemispheres
99.5
Pontine nuclei nTPM: 85.5
1863
Male, age 55, unknown
109.3
2727
Male, age 61, right hemisphere
105.2
1968
Male, age 76, left hemisphere
94.6
2787
Female, age 85, both hemispheres
81.7
2319
Female, age 91, both hemispheres
77.3
2109
Female, age 72, unknown
76.9
2115
Male, age 80, left hemisphere
70.5
2454
Male, age 74, left hemisphere
68.8
Pontine raphe nucleus nTPM: 99.1
2853
Male, age 76, midline
104.6
2122
Female, age 85, midline
93.6
Posteroventral cochlear nucleus nTPM: 88.7
2752
Female, age 85, both hemispheres
101.1
2070
Male, age 76, both hemispheres
93.5
2341
Male, age 80, both hemispheres
87.1
2371
Male, age 61, both hemispheres
86.1
2135
Female, age 91, both hemispheres
75.6
Principal sensory trigeminal nucleus nTPM: 96.5
2324
Male, age 76, both hemispheres
138.0
2158
Male, age 61, both hemispheres
91.6
2008
Male, age 80, left hemisphere
83.5
2367
Female, age 91, left hemisphere
73.0
Reticular pontine nucleus, caudal nTPM: 81.0
2092
Male, age 76, both hemispheres
96.2
2559
Male, age 74, both hemispheres
76.8
2457
Female, age 91, both hemispheres
76.7
2332
Male, age 80, right hemisphere
74.1
Reticular pontine nucleus, oral nTPM: 91.0
2167
Male, age 76, both hemispheres
104.6
1939
Male, age 80, both hemispheres
104.3
2012
Female, age 85, both hemispheres
99.4
2366
Female, age 91, both hemispheres
85.2
2361
Male, age 74, both hemispheres
61.4
Reticulotegmental nucleus nTPM: 98.0
2325
Male, age 76, both hemispheres
112.2
2333
Male, age 80, both hemispheres
100.6
2322
Female, age 91, both hemispheres
98.5
2452
Male, age 74, both hemispheres
80.8
Spinal trigeminal nucleus, oral nTPM: 117.2
2737
Female, age 85, both hemispheres
131.7
2164
Male, age 80, both hemispheres
113.9
1978
Male, age 76, both hemispheres
105.9
Subcoeruleus area nTPM: 96.4
1958
Male, age 80, both hemispheres
101.3
2323
Female, age 91, left hemisphere
99.8
2369
Female, age 85, left hemisphere
97.2
2451
Male, age 74, both hemispheres
97.2
2089
Male, age 76, left hemisphere
86.4
Superior olive nTPM: 80.4
1875
Female, age 85, both hemispheres
87.5
2020
Male, age 76, both hemispheres
85.6
2329
Male, age 80, right hemisphere
79.8
2364
Male, age 74, right hemisphere
77.3
2561
Female, age 91, both hemispheres
71.7
Ventral periolivary nuclei nTPM: 84.8
2023
Male, age 76, both hemispheres
90.0
2165
Male, age 80, both hemispheres
89.8
2130
Female, age 85, both hemispheres
88.5
2794
Female, age 91, left hemisphere
70.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 86.0
2359
Male, age 61, both hemispheres
97.9
2840
Female, age 85, both hemispheres
96.2
1959
Male, age 76, both hemispheres
93.3
2161
Male, age 80, both hemispheres
78.6
2449
Male, age 74, both hemispheres
77.7
2456
Female, age 91, both hemispheres
72.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
37.7
Pig sample
Sample description
nTPM
Pons nTPM: 37.7
Samples: 4
Max nTPM: 40.1
Min nTPM: 35.7
Sample A
Female
36.8
Sample B
Female
35.7
Sample C
Male
40.1
Sample D
Male
38.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
