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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.1
nTPM
Monaco:
100.4
nTPM
Schmiedel:
131.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
4.1
HPA sample
nTPM
gdT-cell nTPM: 0.9
Samples: 6
Max nTPM: 2.3
Min nTPM: 0.2
P10809_1007
1.9
P10809_1022
0.2
P10809_1041
0.2
P10809_1060
2.3
P10809_1077
0.6
P10809_1098
0.3
MAIT T-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1006
0.6
P10809_1024
0.0
P10809_1043
0.1
P10809_1062
0.2
P10809_1083
0.1
P10809_1097
0.0
Memory CD4 T-cell nTPM: 0.8
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.1
P10809_1014
1.2
P10809_1026
0.2
P10809_1045
0.1
P10809_1064
2.6
P10809_1086
0.5
P10809_1113
0.2
Memory CD8 T-cell nTPM: 2.4
Samples: 5
Max nTPM: 5.0
Min nTPM: 0.2
P10809_1012
4.7
P10809_1027
0.6
P10809_1046
0.2
P10809_1065
5.0
P10809_1111
1.4
Naive CD4 T-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1015
0.0
P10809_1030
0.1
P10809_1049
0.0
P10809_1068
0.0
P10809_1085
0.1
P10809_1112
0.1
Naive CD8 T-cell nTPM: 1.1
Samples: 6
Max nTPM: 4.4
Min nTPM: 0.1
P10809_1016
0.5
P10809_1031
0.1
P10809_1050
0.1
P10809_1069
4.4
P10809_1087
0.9
P10809_1110
0.4
T-reg nTPM: 4.1
Samples: 6
Max nTPM: 9.0
Min nTPM: 1.1
P10809_1018
9.0
P10809_1037
1.1
P10809_1056
2.1
P10809_1075
6.8
P10809_1094
2.1
P10809_1106
3.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
100.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 16.2
Samples: 4
Max nTPM: 31.5
Min nTPM: 2.4
RHH5202_R3573
2.4
RHH5230_R3602
28.1
RHH5259_R3631
31.5
RHH5288_R3660
2.7
Effector memory CD8 T-cell nTPM: 100.5
Samples: 4
Max nTPM: 265.8
Min nTPM: 6.0
RHH5203_R3574
10.7
RHH5231_R3603
265.8
RHH5260_R3632
119.4
RHH5289_R3661
6.0
MAIT T-cell nTPM: 7.8
Samples: 4
Max nTPM: 24.6
Min nTPM: 0.5
RHH5233_R3605
24.6
RHH5205_R3576
0.7
RHH5262_R3634
5.2
RHH5297_R3663
0.5
Memory CD4 T-cell TFH nTPM: 6.1
Samples: 4
Max nTPM: 14.9
Min nTPM: 0.2
RHH5300_R3666
0.2
RHH5236_R3608
14.9
RHH5265_R3637
8.7
RHH5208_R3579
0.4
Memory CD4 T-cell Th1 nTPM: 19.1
Samples: 4
Max nTPM: 37.0
Min nTPM: 2.0
RHH5210_R3581
2.0
RHH5302_R3668
2.3
RHH5238_R3610
35.1
RHH5267_R3639
37.0
Memory CD4 T-cell Th1/Th17 nTPM: 5.7
Samples: 4
Max nTPM: 13.6
Min nTPM: 0.8
RHH5303_R3669
0.9
RHH5211_R3582
0.8
RHH5239_R3611
7.3
RHH5268_R3640
13.6
Memory CD4 T-cell Th17 nTPM: 9.9
Samples: 4
Max nTPM: 22.3
Min nTPM: 0.4
RHH5304_R3670
0.4
RHH5212_R3583
1.6
RHH5240_R3612
22.3
RHH5269_R3641
15.4
Memory CD4 T-cell Th2 nTPM: 8.9
Samples: 4
Max nTPM: 17.5
Min nTPM: 0.4
RHH5305_R3671
0.4
RHH5213_R3584
0.6
RHH5241_R3613
17.1
RHH5270_R3642
17.5
Naive CD4 T-cell nTPM: 2.6
Samples: 4
Max nTPM: 7.8
Min nTPM: 0.5
RHH5306_R3672
0.5
RHH5214_R3585
0.5
RHH5242_R3614
7.8
RHH5271_R3643
1.6
Naive CD8 T-cell nTPM: 0.5
Samples: 4
Max nTPM: 1.6
Min nTPM: 0.0
RHH5201_R3572
0.0
RHH5229_R3601
0.4
RHH5258_R3630
1.6
RHH5287_R3659
0.0
Non-Vd2 gdTCR nTPM: 70.5
Samples: 4
Max nTPM: 187.9
Min nTPM: 3.2
RHH5235_R3607
85.3
RHH5264_R3636
187.9
RHH5207_R3578
3.2
RHH5299_R3665
5.4
T-reg nTPM: 29.6
Samples: 4
Max nTPM: 82.3
Min nTPM: 1.4
RHH5301_R3667
3.5
RHH5237_R3609
82.3
RHH5266_R3638
31.0
RHH5209_R3580
1.4
Terminal effector memory CD4 T-cell nTPM: 57.6
Samples: 2
Max nTPM: 57.9
Min nTPM: 57.2
RHH5243_R3615
57.2
RHH5272_R3644
57.9
Terminal effector memory CD8 T-cell nTPM: 83.6
Samples: 4
Max nTPM: 172.5
Min nTPM: 8.4
RHH5232_R3604
172.5
RHH5204_R3575
8.4
RHH5261_R3633
143.8
RHH5296_R3662
9.6
Vd2 gdTCR nTPM: 47.1
Samples: 4
Max nTPM: 96.8
Min nTPM: 1.5
RHH5234_R3606
96.8
RHH5206_R3577
7.2
RHH5263_R3635
83.0
RHH5298_R3664
1.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
