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  • HLA-DRB5
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:179.3 nTPM
HPA:179.3 nTPM
GTEx:92.0 nTPM
FANTOM5:45.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043151
Glandular cells Not detected


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPM 179.3
overview
Male, age 65
Small intestine sample 232
nTPM: 38.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 296
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 3.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 378.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 92.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 92.0
Samples: 187

Max nTPM: 626.1
Min nTPM: 4.3
Std nTPM: 86.3
Median nTPM: 69.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 626.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 442.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 368.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 324.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 321.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 319.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 298.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 294.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 271.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 270.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 243.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 241.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 233.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 224.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 214.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 201.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 201.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 200.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 195.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 191.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 189.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 183.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 182.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 182.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 178.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 177.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 174.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 174.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 171.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 163.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 159.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 158.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 152.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 152.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 147.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 146.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 139.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 131.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 131.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 130.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 130.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 129.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 126.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 124.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 123.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 122.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 120.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 119.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 119.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 115.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 114.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 107.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 107.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 107.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 103.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 102.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 100.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 98.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 95.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 95.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 94.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 92.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 92.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 91.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 91.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 88.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 87.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 87.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 86.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 86.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 85.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 84.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 84.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 83.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 83.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 82.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 82.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 80.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 79.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 79.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 78.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 78.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 77.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 76.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 76.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 74.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 73.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 73.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 71.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 71.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 70.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 70.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 69.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 69.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 68.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 68.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 66.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 64.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 64.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 62.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 61.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 61.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 60.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 59.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 59.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 58.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 58.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 57.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 54.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 53.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 53.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 52.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 52.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 51.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 51.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 50.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 50.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 49.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 49.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 48.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 48.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 48.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 47.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 45.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 45.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 44.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 43.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 43.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 42.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 42.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 41.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 41.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 40.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 40.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 40.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 39.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 39.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 39.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 38.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 36.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 36.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 36.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 34.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 34.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 33.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 33.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 32.9
GTEX-1192X-2526-SM-59868 50-59 years, male 31.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 31.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 30.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 30.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 29.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 29.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 26.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 24.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 24.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 24.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 21.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 21.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 21.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 21.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 19.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 19.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 18.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 17.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 17.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 17.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 15.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 15.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 14.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 14.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 14.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 14.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 13.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 13.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 12.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 11.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 11.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 10.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 10.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 9.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 8.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 7.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 6.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 6.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 6.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 45.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 45.0
FF:10024-101D6 15,40,85 years, mixed 45.0

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