HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:11.6 nTPM
GTEx:8.9 nTPM
FANTOM5:20.4 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:14.0 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035360
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Hippocampus
nTPM: 10.5
1898 Male, age 80, left hemisphere 12.5
2529 Female, age 94, left hemisphere 12.5
2621 Female, age 67, right hemisphere 9.9
2148 Female, age 91, left hemisphere 9.8
1911 Female, age 85, right hemisphere 9.3
1855 Male, age 76, left hemisphere 8.7
Dentate gyrus
nTPM: 10.9
2530 Female, age 94, left hemisphere 12.8
2531 Female, age 67, both hemispheres 11.2
2010 Male, age 76, both hemispheres 10.9
2528 Male, age 74, both hemispheres 10.8
2246 Female, age 85, both hemispheres 10.2
1927 Female, age 91, both hemispheres 9.7
Entorhinal gyrus
nTPM: 11.6
2764 Male, age 80, right hemisphere 12.8
1787 Male, age 76, left hemisphere 12.4
1938 Female, age 85, left hemisphere 12.0
2613 Female, age 94, left hemisphere 11.3
2686 Male, age 75, right hemisphere 10.7
2117 Female, age 91, right hemisphere 10.6
Hippocampus, CA1
nTPM: 10.6
2749 Male, age 80, left hemisphere 12.1
2082 Female, age 91, right hemisphere 11.2
2527 Male, age 74, both hemispheres 10.4
1873 Female, age 85, both hemispheres 9.7
2045 Male, age 76, both hemispheres 9.3
Hippocampus, CA2
nTPM: 11.5
1940 Female, age 85, left hemisphere 13.7
2437 Female, age 94, left hemisphere 12.3
2249 Male, age 74, both hemispheres 11.4
1963 Male, age 80, left hemisphere 11.3
2113 Female, age 91, right hemisphere 10.9
1892 Male, age 76, both hemispheres 9.8
Hippocampus, CA3
nTPM: 11.2
2137 Male, age 80, left hemisphere 12.4
2436 Male, age 74, both hemispheres 12.2
1867 Male, age 76, both hemispheres 11.1
2861 Female, age 67, both hemispheres 11.1
1891 Female, age 85, both hemispheres 10.3
2620 Female, age 94, left hemisphere 10.0
Parahippocampal cortex
nTPM: 10.7
2018 Male, age 76, both hemispheres 12.4
2532 Female, age 72, left hemisphere 12.0
1933 Female, age 85, both hemispheres 11.1
2245 Female, age 91, both hemispheres 11.0
1990 Female, age 91, right hemisphere 10.9
2692 Male, age 74, both hemispheres 10.8
1850 Male, age 80, both hemispheres 10.4
2250 Female, age 67, right hemisphere 9.8
2622 Female, age 67, right hemisphere 9.5
2693 Female, age 94, both hemispheres 9.1
Perirhinal gyrus
nTPM: 11.0
1847 Female, age 91, left hemisphere 12.1
1794 Male, age 80, right hemisphere 11.5
2521 Female, age 94, right hemisphere 11.3
1841 Female, age 85, right hemisphere 11.0
2848 Male, age 76, right hemisphere 9.0
Subiculum
nTPM: 10.8
1901 Male, age 80, both hemispheres 12.3
1977 Female, age 85, both hemispheres 12.2
2729 Female, age 91, right hemisphere 10.9
2042 Male, age 76, both hemispheres 10.5
2619 Male, age 74, both hemispheres 10.5
2438 Female, age 94, left hemisphere 8.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.9
Samples: 197

Max nTPM: 16.7
Min nTPM: 4.0
Std nTPM: 2.1
Median nTPM: 8.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 16.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 15.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 15.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 14.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 14.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 13.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 12.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 12.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 12.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 12.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 12.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.4
FF:10169-103B7 60 years, female 20.7
FF:10153-102I9 76 years, female 20.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.3
Pig sample Sample description nTPM
Subiculum
nTPM: 10.1
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.4
Sample A Female 11.4
Sample B Female 10.0
Sample C Male 9.6
Sample D Male 9.4
Dorsal hippocampus
nTPM: 11.3
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.5
Sample A Female 13.0
Sample B Female 11.1
Sample C Male 10.5
Sample D Male 10.6
Entorhinal cortex
nTPM: 10.4
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.4
Sample A Female 11.7
Sample B Female 10.6
Sample C Male 9.9
Sample D Male 9.4
Ventral hippocampus
nTPM: 10.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.5
Sample A Female 10.5
Sample B Female 9.5
Sample C Male 12.7
Sample D Male 9.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.9
Samples: 4

Max nTPM: 14.9
Min nTPM: 11.1
Sample A Male 14.8
Sample B Male 14.9
Sample C Female 14.6
Sample D Female 11.1
Hippocampal formation
nTPM: 14.0
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.1
Sample A Male 15.4
Sample B Male 13.1
Sample C Female 13.3
Sample D Female 14.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
76081043 Antisense, RP_060608_03_E03, Mouse strain C57BL/6J (56 days, male) 0.3

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