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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
343.6
nTPM
GTEx:
343.6
nTPM
FANTOM5:
498.7
Scaled Tags Per Million
Pig:
251.7
nTPM
Mouse:
443.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA078826
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
343.6
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 343.6
Samples: 105
Max nTPM: 554.4
Min nTPM: 178.0
Std nTPM: 76.9
Median nTPM:
6_1
73 years, female
554.4
172_1
72 years, female
524.9
218_1
71 years, female
495.9
379_1
60 years, male
490.2
386_1
76 years, male
468.8
352_1
62 years, male
468.3
375_1
74 years, female
458.4
229_1
69 years, female
458.1
163_1
78 years, male
450.0
354_1
81 years, female
448.1
319_1
81 years, male
441.4
350_1
84 years, female
432.6
425_1
59 years, female
426.5
177_1
74 years, male
425.2
468_1
89 years, male
422.2
447_1
81 years, male
421.6
349_1
83 years, male
421.5
355_1
70 years, female
419.6
335_1
73 years, female
416.3
142_1
61 years, female
411.2
115_1
83 years, male
410.0
321_1
62 years, female
408.1
347_1
72 years, male
406.3
286_1
68 years, female
404.7
376_1
75 years, female
404.1
389_1
86 years, female
403.4
396_1
62 years, male
398.9
316_1
62 years, male
398.8
324_1
76 years, male
395.7
356_1
87 years, female
395.4
406_1
79 years, male
392.6
480_1
63 years, male
392.3
99_1
64 years, male
391.1
503_1
68 years, male
388.7
404_1
82 years, female
387.7
153_1
70 years, female
383.2
266_1
85 years, male
382.4
237_1
82 years, male
377.6
318_1
68 years, male
371.7
526_1
61 years, male
370.1
394_1
75 years, female
368.6
117_1
61 years, male
368.0
9_1
66 years, female
367.5
246_1
77 years, male
365.8
405_1
91 years, male
365.5
32_1
67 years, male
365.1
243_1
75 years, male
361.0
265_1
87 years, male
356.4
348_1
84 years, male
349.0
126_1
63 years, male
348.6
217_1
76 years, male
345.5
414_1
84 years, female
340.1
499_1
55 years, female
337.5
351_1
91 years, male
337.0
173_1
67 years, male
336.1
162_1
79 years, female
335.8
415_1
77 years, female
335.0
377_1
82 years, female
332.1
313_1
79 years, female
328.8
517_1
88 years, male
319.6
189_1
76 years, male
318.4
264_1
73 years, female
318.0
353_1
82 years, female
316.5
145_1
84 years, male
313.8
317_1
60 years, male
312.4
81_1
67 years, male
310.7
254_1
77 years, female
309.5
120_1
70 years, female
306.8
35_1
74 years, female
306.6
452_1
88 years, female
305.0
251_1
78 years, male
301.2
518_1
75 years, female
299.1
42_1
85 years, male
299.0
137_1
83 years, male
298.3
4_1
88 years, female
295.0
292_1
71 years, male
294.9
466_1
57 years, female
294.7
43_1
64 years, female
293.2
384_1
83 years, male
291.7
291_1
76 years, male
290.6
322_1
76 years, male
285.1
311_1
78 years, male
283.9
18_1
88 years, male
280.2
109_1
81 years, female
277.1
320_1
89 years, female
276.2
490_1
67 years, female
273.0
139_1
64 years, female
270.8
315_1
62 years, female
262.3
506_1
65 years, male
260.1
2_1
77 years, female
257.8
17_1
71 years, male
253.9
119_1
70 years, female
252.5
295_1
61 years, female
251.6
307_1
66 years, female
249.9
413_1
59 years, female
240.2
149_1
88 years, male
238.8
288_1
66 years, female
238.5
314_1
67 years, male
227.0
89_1
63 years, male
226.9
293_1
68 years, female
223.5
41_1
94 years, female
220.3
308_1
70 years, female
208.0
491_1
89 years, female
194.7
495_1
57 years, female
192.6
501_1
88 years, male
178.0
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.