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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
17.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 17.9
Samples: 152
Max nTPM: 60.0
Min nTPM: 0.0
Std nTPM: 13.2
Median nTPM: 21.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
60.0
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
52.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
52.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
44.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
44.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
43.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
38.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
35.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
35.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
34.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
33.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
32.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
31.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
31.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
31.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
30.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
30.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
30.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
29.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
29.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
29.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
28.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
28.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
28.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
27.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
27.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
27.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
27.5
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
27.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
27.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
27.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
26.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
26.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
26.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
26.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
26.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
25.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
25.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
25.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
25.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
25.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
25.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
24.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
24.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
24.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
24.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
24.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
24.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
24.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
24.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
23.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
23.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
23.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
23.4
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
23.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
22.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
22.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
22.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
22.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
22.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
22.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
22.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
22.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
22.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
22.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
22.4
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
22.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
22.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
22.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
22.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
22.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
21.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
21.9
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
21.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
21.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
21.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
21.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
21.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
21.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
21.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
20.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
20.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
20.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
20.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
20.3
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
20.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
20.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
20.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
19.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
19.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
19.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
19.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
19.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
19.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
19.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
19.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
18.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
18.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
18.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
17.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
17.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
17.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
16.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
16.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
15.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
14.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
13.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
0.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
0.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
0.2
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
0.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
0.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
0.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
0.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
0.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
0.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
0.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
0.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
0.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
0.0
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
0.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
0.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
0.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
0.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
0.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
0.0
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
0.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
0.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
0.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
0.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
0.0
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
0.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
0.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
0.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
0.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
0.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
0.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
0.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
0.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
0.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
0.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
0.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
0.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
0.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
0.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
0.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
0.0
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
0.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
0.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
0.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
0.0
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
0.0
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.