MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:14.7 nTPM
GTEx:13.2 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:48.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.7
2828 Female, age 72, unknown 13.0
2586 Male, age 75, left hemisphere 11.5
1827 Male, age 72, unknown 11.0
1833 Male, age 53, unknown 10.8
2411 Female, age 72, unknown 10.4
1870 Female, age 42, unknown 10.3
2019 Male, age 18, unknown 10.2
2666 Male, age 74, left hemisphere 10.2
2219 Male, age 76, both hemispheres 10.1
1830 Male, age 51, unknown 9.2
Dorsal raphe nucleus
nTPM: 12.9
2298 Female, age 72, unknown 15.0
2047 Male, age 72, unknown 13.8
1828 Male, age 53, unknown 12.5
2750 Male, age 76, both hemispheres 12.3
2016 Female, age 72, unknown 10.9
Inferior colliculus
nTPM: 8.7
2097 Female, age 72, unknown 10.0
1848 Female, age 42, unknown 8.9
1890 Male, age 53, unknown 8.1
2849 Male, age 72, unknown 7.9
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Periaquaductal grey, anterior
nTPM: 11.3
1947 Male, age 18, unknown 12.8
1795 Male, age 51, unknown 11.8
2502 Female, age 75, unknown 9.4
Periaquaductal grey, dorsal
nTPM: 10.2
2850 Male, age 76, both hemispheres 11.4
1840 Male, age 53, unknown 10.3
1831 Male, age 72, unknown 10.0
2464 Female, age 72, unknown 9.1
Periaquaductal grey, lateral
nTPM: 10.7
2272 Male, age 74, both hemispheres 12.4
2140 Male, age 76, both hemispheres 10.1
2053 Male, age 18, unknown 9.5
Pretectal area
nTPM: 10.7
1817 Female, age 42, unknown 12.2
2273 Male, age 74, both hemispheres 12.2
1816 Male, age 51, unknown 11.7
1815 Male, age 53, unknown 11.6
2667 Female, age 75, unknown 11.5
2007 Male, age 72, unknown 10.7
2224 Female, age 72, unknown 10.1
2407 Male, age 75, both hemispheres 9.7
1944 Female, age 72, unknown 9.4
2316 Male, age 76, right hemisphere 9.2
2825 Male, age 18, unknown 8.7
Red nucleus
nTPM: 11.0
1821 Female, age 72, unknown 13.2
2725 Female, age 75, unknown 12.3
1865 Male, age 51, unknown 11.8
2785 Male, age 18, unknown 11.7
1954 Female, age 42, unknown 11.6
2769 Male, age 72, unknown 11.6
1904 Male, age 53, unknown 11.0
2227 Male, age 72, unknown 10.6
2584 Male, age 75, left hemisphere 10.5
2588 Male, age 74, left hemisphere 9.5
2503 Female, age 72, unknown 9.3
2823 Male, age 76, right hemisphere 8.6
Substantia nigra
nTPM: 14.7
1916 Female, age 42, unknown 20.0
1851 Male, age 51, unknown 17.1
2409 Female, age 72, unknown 15.5
2699 Male, age 18, unknown 15.3
1941 Male, age 53, unknown 14.9
2241 Male, age 72, unknown 14.1
2590 Female, age 75, unknown 13.8
1889 Female, age 72, unknown 12.5
2665 Male, age 74, both hemispheres 12.3
2583 Male, age 75, right hemisphere 11.9
Superior colliculus
nTPM: 10.7
1796 Male, age 53, unknown 12.1
1913 Female, age 42, unknown 11.7
2261 Male, age 18, unknown 11.6
2587 Male, age 74, left hemisphere 11.6
2668 Female, age 75, unknown 11.1
1995 Male, age 72, unknown 10.6
2664 Male, age 75, both hemispheres 10.6
1839 Male, age 51, unknown 9.8
2087 Female, age 72, unknown 9.1
1895 Male, age 76, right hemisphere 8.8
Ventral tegmental area
nTPM: 13.8
2410 Female, age 72, unknown 17.8
2218 Male, age 76, both hemispheres 16.9
1915 Female, age 42, unknown 15.0
1942 Male, age 51, unknown 11.5
2021 Male, age 53, unknown 11.2
2223 Female, age 72, unknown 10.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.2
Samples: 139

Max nTPM: 23.1
Min nTPM: 3.4
Std nTPM: 3.5
Median nTPM: 12.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 22.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 21.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 21.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 21.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 20.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 20.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 19.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 18.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 18.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.3
Samples: 4

Max nTPM: 23.0
Min nTPM: 18.9
Sample A Female 19.1
Sample B Female 20.2
Sample C Male 18.9
Sample D Male 23.0
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 27.8
Min nTPM: 13.9
Sample A Female 27.8
Sample B Female 17.8
Sample C Male 15.7
Sample D Male 13.9
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 16.5
Min nTPM: 15.9
Sample B Female 15.9
Sample C Male 16.4
Sample D Male 16.5
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 25.6
Min nTPM: 15.1
Sample A Female 21.4
Sample B Female 25.6
Sample C Male 15.1
Sample D Male 17.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.5
Samples: 4

Max nTPM: 56.4
Min nTPM: 38.6
Sample A Male 56.4
Sample B Male 48.2
Sample C Female 38.6
Sample D Female 50.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68342348 Antisense, RP_041214_01_C02, Mouse strain C57BL/6J (56 days, male) 0.2

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