HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.9 nTPM
HPA Brain:67.6 nTPM
GTEx:28.9 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:44.4 nTPM
Mouse:45.2 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 67.6
Sample id Sample description nTPM
Hippocampus
nTPM: 41.1
2529 Female, age 94, left hemisphere 53.2
1911 Female, age 85, right hemisphere 51.7
2621 Female, age 67, right hemisphere 46.0
2148 Female, age 91, left hemisphere 36.6
1855 Male, age 76, left hemisphere 30.4
1898 Male, age 80, left hemisphere 28.7
Dentate gyrus
nTPM: 39.6
2530 Female, age 94, left hemisphere 55.6
2528 Male, age 74, both hemispheres 39.9
2246 Female, age 85, both hemispheres 39.3
1927 Female, age 91, both hemispheres 36.5
2531 Female, age 67, both hemispheres 36.3
2010 Male, age 76, both hemispheres 29.9
Entorhinal gyrus
nTPM: 67.6
1938 Female, age 85, left hemisphere 87.2
2117 Female, age 91, right hemisphere 71.5
2764 Male, age 80, right hemisphere 69.4
1787 Male, age 76, left hemisphere 68.0
2613 Female, age 94, left hemisphere 62.0
2686 Male, age 75, right hemisphere 47.5
Hippocampus, CA1
nTPM: 35.7
2527 Male, age 74, both hemispheres 45.4
2045 Male, age 76, both hemispheres 35.2
2082 Female, age 91, right hemisphere 33.5
1873 Female, age 85, both hemispheres 33.2
2749 Male, age 80, left hemisphere 31.0
Hippocampus, CA2
nTPM: 44.5
2249 Male, age 74, both hemispheres 57.1
2437 Female, age 94, left hemisphere 46.4
1940 Female, age 85, left hemisphere 44.4
1963 Male, age 80, left hemisphere 43.6
2113 Female, age 91, right hemisphere 40.5
1892 Male, age 76, both hemispheres 35.3
Hippocampus, CA3
nTPM: 37.6
1891 Female, age 85, both hemispheres 62.7
1867 Male, age 76, both hemispheres 52.6
2436 Male, age 74, both hemispheres 36.3
2137 Male, age 80, left hemisphere 28.0
2620 Female, age 94, left hemisphere 24.0
2861 Female, age 67, both hemispheres 22.0
Parahippocampal cortex
nTPM: 53.1
1990 Female, age 91, right hemisphere 70.8
2532 Female, age 72, left hemisphere 69.6
2692 Male, age 74, both hemispheres 62.8
1850 Male, age 80, both hemispheres 62.2
1933 Female, age 85, both hemispheres 59.1
2245 Female, age 91, both hemispheres 49.8
2250 Female, age 67, right hemisphere 41.9
2693 Female, age 94, both hemispheres 40.3
2622 Female, age 67, right hemisphere 38.4
2018 Male, age 76, both hemispheres 36.0
Perirhinal gyrus
nTPM: 52.0
1841 Female, age 85, right hemisphere 58.6
1847 Female, age 91, left hemisphere 54.7
2848 Male, age 76, right hemisphere 52.3
1794 Male, age 80, right hemisphere 49.4
2521 Female, age 94, right hemisphere 44.8
Subiculum
nTPM: 59.5
1977 Female, age 85, both hemispheres 73.9
2438 Female, age 94, left hemisphere 68.9
1901 Male, age 80, both hemispheres 68.5
2042 Male, age 76, both hemispheres 61.4
2619 Male, age 74, both hemispheres 52.7
2729 Female, age 91, right hemisphere 31.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.9
Samples: 197

Max nTPM: 64.1
Min nTPM: 4.1
Std nTPM: 12.4
Median nTPM: 27.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 64.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 61.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 61.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 60.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 60.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 56.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 54.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 52.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 51.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 51.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.5
FF:10153-102I9 76 years, female 66.8
FF:10169-103B7 60 years, female 32.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.4
Pig sample Sample description nTPM
Subiculum
nTPM: 37.6
Samples: 4

Max nTPM: 46.7
Min nTPM: 32.6
Sample A Female 46.7
Sample B Female 37.5
Sample C Male 33.7
Sample D Male 32.6
Dorsal hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 42.5
Min nTPM: 24.1
Sample A Female 28.9
Sample B Female 24.1
Sample C Male 42.5
Sample D Male 26.7
Entorhinal cortex
nTPM: 44.4
Samples: 4

Max nTPM: 49.5
Min nTPM: 39.6
Sample A Female 39.6
Sample B Female 49.5
Sample C Male 47.8
Sample D Male 40.8
Ventral hippocampus
nTPM: 24.8
Samples: 4

Max nTPM: 29.5
Min nTPM: 19.5
Sample A Female 19.5
Sample B Female 23.1
Sample C Male 27.1
Sample D Male 29.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 45.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.2
Samples: 4

Max nTPM: 51.7
Min nTPM: 36.8
Sample A Male 51.7
Sample B Male 47.9
Sample C Female 36.8
Sample D Female 44.5
Hippocampal formation
nTPM: 27.1
Samples: 4

Max nTPM: 33.3
Min nTPM: 22.3
Sample A Male 33.3
Sample B Male 26.4
Sample C Female 22.3
Sample D Female 26.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
81671346 Antisense, RP_081002_02_D05, Mouse strain C57BL/6J (56 days, male) 3.3
539 Antisense, RP_Baylor_103328, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org