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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
68995.8
nTPM
HPA Brain:
31395.6
nTPM
GTEx:
68995.8
nTPM
Pig:
21373.9
nTPM
Mouse:
14171.9
nTPM
Allen mouse:
27.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA066847
Antibody CAB033779
Glial cells
Not detected
Low
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
31395.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 31395.6
2621
Female, age 67, right hemisphere
59657.1
2529
Female, age 94, left hemisphere
37244.8
1855
Male, age 76, left hemisphere
28352.2
2148
Female, age 91, left hemisphere
26041.7
1911
Female, age 85, right hemisphere
23624.4
1898
Male, age 80, left hemisphere
13453.7
Dentate gyrus nTPM: 27478.8
2531
Female, age 67, both hemispheres
52593.2
2530
Female, age 94, left hemisphere
41365.4
2246
Female, age 85, both hemispheres
32782.0
2528
Male, age 74, both hemispheres
14311.4
2010
Male, age 76, both hemispheres
12779.8
1927
Female, age 91, both hemispheres
11041.1
Entorhinal gyrus nTPM: 23372.3
2686
Male, age 75, right hemisphere
50695.0
2613
Female, age 94, left hemisphere
28063.0
2117
Female, age 91, right hemisphere
18308.4
1938
Female, age 85, left hemisphere
15814.9
1787
Male, age 76, left hemisphere
14101.3
2764
Male, age 80, right hemisphere
13251.3
Hippocampus, CA1 nTPM: 18036.2
2527
Male, age 74, both hemispheres
30466.2
1873
Female, age 85, both hemispheres
16870.1
2749
Male, age 80, left hemisphere
16572.8
2045
Male, age 76, both hemispheres
15843.9
2082
Female, age 91, right hemisphere
10428.0
Hippocampus, CA2 nTPM: 17470.9
2437
Female, age 94, left hemisphere
33008.3
1940
Female, age 85, left hemisphere
17671.2
1892
Male, age 76, both hemispheres
17250.8
2113
Female, age 91, right hemisphere
15817.6
1963
Male, age 80, left hemisphere
11529.1
2249
Male, age 74, both hemispheres
9548.6
Hippocampus, CA3 nTPM: 31194.8
2861
Female, age 67, both hemispheres
92329.7
2137
Male, age 80, left hemisphere
22236.2
2620
Female, age 94, left hemisphere
21075.7
1867
Male, age 76, both hemispheres
18705.7
1891
Female, age 85, both hemispheres
16518.4
2436
Male, age 74, both hemispheres
16302.9
Parahippocampal cortex nTPM: 28876.9
2622
Female, age 67, right hemisphere
52667.3
2245
Female, age 91, both hemispheres
51958.1
2532
Female, age 72, left hemisphere
40034.0
2692
Male, age 74, both hemispheres
37624.8
2250
Female, age 67, right hemisphere
22895.7
2018
Male, age 76, both hemispheres
22784.2
2693
Female, age 94, both hemispheres
21706.9
1933
Female, age 85, both hemispheres
15303.2
1850
Male, age 80, both hemispheres
13277.8
1990
Female, age 91, right hemisphere
10517.4
Perirhinal gyrus nTPM: 13385.6
2848
Male, age 76, right hemisphere
18548.9
2521
Female, age 94, right hemisphere
15569.7
1841
Female, age 85, right hemisphere
13241.5
1794
Male, age 80, right hemisphere
11004.1
1847
Female, age 91, left hemisphere
8564.0
Subiculum nTPM: 22239.0
2438
Female, age 94, left hemisphere
44085.1
2619
Male, age 74, both hemispheres
27269.1
2042
Male, age 76, both hemispheres
18964.3
1901
Male, age 80, both hemispheres
17419.6
1977
Female, age 85, both hemispheres
15893.7
2729
Female, age 91, right hemisphere
9802.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
68995.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 68995.8
Samples: 197
Max nTPM: 304105.0
Min nTPM: 11209.4
Std nTPM: 52805.0
Median nTPM: 52365.5
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
14171.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 14171.9
Samples: 4
Max nTPM: 14986.5
Min nTPM: 12477.0
Sample A
Male
14647.1
Sample B
Male
12477.0
Sample C
Female
14986.5
Sample D
Female
14576.9
Hippocampal formation nTPM: 12674.1
Samples: 4
Max nTPM: 14360.8
Min nTPM: 11397.0
Sample A
Male
14360.8
Sample B
Male
12048.7
Sample C
Female
12889.7
Sample D
Female
11397.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
