MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:47.9 nTPM
GTEx:10.1 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:45.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.3
2219 Male, age 76, both hemispheres 35.4
2411 Female, age 72, unknown 35.1
1870 Female, age 42, unknown 34.1
1827 Male, age 72, unknown 33.8
1833 Male, age 53, unknown 32.8
1830 Male, age 51, unknown 31.0
2019 Male, age 18, unknown 28.3
2666 Male, age 74, left hemisphere 27.8
2828 Female, age 72, unknown 27.2
2586 Male, age 75, left hemisphere 27.1
Dorsal raphe nucleus
nTPM: 39.8
2298 Female, age 72, unknown 46.8
2047 Male, age 72, unknown 44.0
2016 Female, age 72, unknown 41.4
1828 Male, age 53, unknown 33.7
2750 Male, age 76, both hemispheres 32.9
Inferior colliculus
nTPM: 35.7
2097 Female, age 72, unknown 37.1
2849 Male, age 72, unknown 36.3
1848 Female, age 42, unknown 34.9
1890 Male, age 53, unknown 34.4
Median raphe nucleus
nTPM: 44.5
2220 Male, age 76, midline 44.5
Periaquaductal grey, anterior
nTPM: 34.4
1947 Male, age 18, unknown 38.8
1795 Male, age 51, unknown 33.4
2502 Female, age 75, unknown 31.2
Periaquaductal grey, dorsal
nTPM: 42.5
2850 Male, age 76, both hemispheres 47.3
1840 Male, age 53, unknown 45.6
1831 Male, age 72, unknown 41.0
2464 Female, age 72, unknown 36.1
Periaquaductal grey, lateral
nTPM: 47.9
2272 Male, age 74, both hemispheres 63.9
2140 Male, age 76, both hemispheres 42.4
2053 Male, age 18, unknown 37.6
Pretectal area
nTPM: 36.5
2273 Male, age 74, both hemispheres 62.6
2224 Female, age 72, unknown 44.7
1816 Male, age 51, unknown 37.5
2825 Male, age 18, unknown 36.5
2667 Female, age 75, unknown 35.6
1944 Female, age 72, unknown 34.4
2407 Male, age 75, both hemispheres 32.3
1817 Female, age 42, unknown 31.3
1815 Male, age 53, unknown 31.1
2007 Male, age 72, unknown 30.8
2316 Male, age 76, right hemisphere 25.3
Red nucleus
nTPM: 28.2
2725 Female, age 75, unknown 32.2
1821 Female, age 72, unknown 31.7
2584 Male, age 75, left hemisphere 29.3
2503 Female, age 72, unknown 28.8
2823 Male, age 76, right hemisphere 28.1
2588 Male, age 74, left hemisphere 27.8
1904 Male, age 53, unknown 27.5
1865 Male, age 51, unknown 27.3
1954 Female, age 42, unknown 27.0
2769 Male, age 72, unknown 26.5
2227 Male, age 72, unknown 26.3
2785 Male, age 18, unknown 26.1
Substantia nigra
nTPM: 34.8
2241 Male, age 72, unknown 42.9
1941 Male, age 53, unknown 39.1
2699 Male, age 18, unknown 38.4
1916 Female, age 42, unknown 37.9
2590 Female, age 75, unknown 34.5
1851 Male, age 51, unknown 33.9
2409 Female, age 72, unknown 33.1
1889 Female, age 72, unknown 32.6
2583 Male, age 75, right hemisphere 30.1
2665 Male, age 74, both hemispheres 25.0
Superior colliculus
nTPM: 32.4
2587 Male, age 74, left hemisphere 38.6
2261 Male, age 18, unknown 36.6
1839 Male, age 51, unknown 34.5
1796 Male, age 53, unknown 34.2
1895 Male, age 76, right hemisphere 33.8
2668 Female, age 75, unknown 30.9
2087 Female, age 72, unknown 29.9
2664 Male, age 75, both hemispheres 29.8
1995 Male, age 72, unknown 28.2
1913 Female, age 42, unknown 27.1
Ventral tegmental area
nTPM: 34.6
2218 Male, age 76, both hemispheres 38.4
2021 Male, age 53, unknown 35.6
1915 Female, age 42, unknown 35.4
2223 Female, age 72, unknown 33.1
1942 Male, age 51, unknown 33.0
2410 Female, age 72, unknown 32.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 139

Max nTPM: 26.9
Min nTPM: 5.2
Std nTPM: 2.7
Median nTPM: 10.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 26.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 15.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 14.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 13.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 13.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 13.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 13.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 6.5
Sample A Female 14.7
Sample B Female 11.1
Sample C Male 15.4
Sample D Male 6.5
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 22.4
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 14.2
Sample C Male 22.4
Sample D Male 16.0
Periaqueductal gray
nTPM: 14.6
Samples: 3

Max nTPM: 17.6
Min nTPM: 12.5
Sample B Female 13.7
Sample C Male 17.6
Sample D Male 12.5
Superior colliculi
nTPM: 15.0
Samples: 4

Max nTPM: 18.9
Min nTPM: 11.4
Sample A Female 15.2
Sample B Female 11.4
Sample C Male 18.9
Sample D Male 14.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.2
Samples: 4

Max nTPM: 46.7
Min nTPM: 42.7
Sample A Male 42.7
Sample B Male 46.6
Sample C Female 46.7
Sample D Female 44.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
72283348 Antisense, RP_051019_01_B11, Mouse strain C57BL/6J (56 days, male) 0.3

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