HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:87.4 nTPM
GTEx:20.5 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:21.0 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017986Antibody HPA077490
Glial cells Not detectedNot detected
Neuronal cells MediumLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 87.4
Sample id Sample description nTPM
Hippocampus
nTPM: 85.3
2148 Female, age 91, left hemisphere 96.5
1855 Male, age 76, left hemisphere 93.4
2529 Female, age 94, left hemisphere 92.4
1911 Female, age 85, right hemisphere 86.9
2621 Female, age 67, right hemisphere 73.7
1898 Male, age 80, left hemisphere 69.0
Dentate gyrus
nTPM: 81.2
2528 Male, age 74, both hemispheres 97.7
2010 Male, age 76, both hemispheres 88.9
2531 Female, age 67, both hemispheres 78.2
2246 Female, age 85, both hemispheres 77.5
1927 Female, age 91, both hemispheres 76.7
2530 Female, age 94, left hemisphere 68.2
Entorhinal gyrus
nTPM: 69.0
2117 Female, age 91, right hemisphere 104.4
1787 Male, age 76, left hemisphere 72.8
2764 Male, age 80, right hemisphere 65.2
2686 Male, age 75, right hemisphere 63.4
1938 Female, age 85, left hemisphere 58.2
2613 Female, age 94, left hemisphere 50.3
Hippocampus, CA1
nTPM: 83.3
2749 Male, age 80, left hemisphere 102.8
2527 Male, age 74, both hemispheres 90.6
2045 Male, age 76, both hemispheres 75.8
1873 Female, age 85, both hemispheres 74.6
2082 Female, age 91, right hemisphere 72.6
Hippocampus, CA2
nTPM: 77.9
2249 Male, age 74, both hemispheres 95.2
1963 Male, age 80, left hemisphere 89.2
2113 Female, age 91, right hemisphere 87.3
1940 Female, age 85, left hemisphere 71.4
2437 Female, age 94, left hemisphere 67.6
1892 Male, age 76, both hemispheres 56.5
Hippocampus, CA3
nTPM: 87.4
2436 Male, age 74, both hemispheres 126.8
2137 Male, age 80, left hemisphere 91.4
1891 Female, age 85, both hemispheres 83.0
2620 Female, age 94, left hemisphere 77.4
1867 Male, age 76, both hemispheres 77.0
2861 Female, age 67, both hemispheres 68.8
Parahippocampal cortex
nTPM: 65.8
2692 Male, age 74, both hemispheres 81.3
2245 Female, age 91, both hemispheres 77.1
2532 Female, age 72, left hemisphere 69.0
2018 Male, age 76, both hemispheres 68.8
1990 Female, age 91, right hemisphere 67.1
2250 Female, age 67, right hemisphere 66.4
1933 Female, age 85, both hemispheres 63.6
2693 Female, age 94, both hemispheres 59.1
1850 Male, age 80, both hemispheres 57.1
2622 Female, age 67, right hemisphere 48.8
Perirhinal gyrus
nTPM: 58.6
2521 Female, age 94, right hemisphere 78.7
1847 Female, age 91, left hemisphere 58.3
1794 Male, age 80, right hemisphere 55.2
1841 Female, age 85, right hemisphere 52.7
2848 Male, age 76, right hemisphere 47.8
Subiculum
nTPM: 84.5
2729 Female, age 91, right hemisphere 98.0
2042 Male, age 76, both hemispheres 92.3
1901 Male, age 80, both hemispheres 88.9
2619 Male, age 74, both hemispheres 79.6
2438 Female, age 94, left hemisphere 78.7
1977 Female, age 85, both hemispheres 69.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.5
Samples: 197

Max nTPM: 46.5
Min nTPM: 5.5
Std nTPM: 6.4
Median nTPM: 19.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 40.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 38.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 37.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 35.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 33.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 32.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 32.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 32.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 31.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 31.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.9
FF:10169-103B7 60 years, female 52.9
FF:10153-102I9 76 years, female 52.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.8
Pig sample Sample description nTPM
Subiculum
nTPM: 12.9
Samples: 4

Max nTPM: 15.6
Min nTPM: 11.8
Sample A Female 15.6
Sample B Female 11.8
Sample C Male 11.8
Sample D Male 12.2
Dorsal hippocampus
nTPM: 21.9
Samples: 4

Max nTPM: 30.4
Min nTPM: 13.8
Sample A Female 30.4
Sample B Female 18.2
Sample C Male 25.0
Sample D Male 13.8
Entorhinal cortex
nTPM: 15.3
Samples: 4

Max nTPM: 16.5
Min nTPM: 14.2
Sample A Female 14.4
Sample B Female 16.1
Sample C Male 14.2
Sample D Male 16.5
Ventral hippocampus
nTPM: 16.2
Samples: 4

Max nTPM: 22.0
Min nTPM: 9.9
Sample A Female 17.1
Sample B Female 9.9
Sample C Male 15.9
Sample D Male 22.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.0
Samples: 4

Max nTPM: 24.6
Min nTPM: 18.6
Sample A Male 24.6
Sample B Male 21.0
Sample C Female 18.6
Sample D Female 19.9
Hippocampal formation
nTPM: 19.3
Samples: 4

Max nTPM: 21.1
Min nTPM: 16.5
Sample A Male 21.1
Sample B Male 20.6
Sample C Female 18.8
Sample D Female 16.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
69752406 Antisense, RP_050505_01_D03, Mouse strain C57BL/6J (56 days, male) 0.5

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