MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA Brain:39.8 nTPM
GTEx:20.4 nTPM
FANTOM5:1.1 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:0.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.3
2828 Female, age 72, unknown 48.4
2219 Male, age 76, both hemispheres 44.5
2586 Male, age 75, left hemisphere 36.5
1827 Male, age 72, unknown 25.1
2019 Male, age 18, unknown 24.9
2666 Male, age 74, left hemisphere 23.2
1870 Female, age 42, unknown 22.1
1830 Male, age 51, unknown 17.4
2411 Female, age 72, unknown 15.6
1833 Male, age 53, unknown 14.9
Dorsal raphe nucleus
nTPM: 21.2
2047 Male, age 72, unknown 27.9
2750 Male, age 76, both hemispheres 27.2
2298 Female, age 72, unknown 19.4
1828 Male, age 53, unknown 17.5
2016 Female, age 72, unknown 14.2
Inferior colliculus
nTPM: 23.9
2097 Female, age 72, unknown 26.9
1890 Male, age 53, unknown 26.7
2849 Male, age 72, unknown 22.0
1848 Female, age 42, unknown 20.0
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Periaquaductal grey, anterior
nTPM: 39.8
1795 Male, age 51, unknown 59.1
2502 Female, age 75, unknown 40.0
1947 Male, age 18, unknown 20.4
Periaquaductal grey, dorsal
nTPM: 17.1
2464 Female, age 72, unknown 20.5
1831 Male, age 72, unknown 18.9
2850 Male, age 76, both hemispheres 18.1
1840 Male, age 53, unknown 10.9
Periaquaductal grey, lateral
nTPM: 24.3
2140 Male, age 76, both hemispheres 28.1
2272 Male, age 74, both hemispheres 23.4
2053 Male, age 18, unknown 21.5
Pretectal area
nTPM: 33.2
1944 Female, age 72, unknown 56.9
2007 Male, age 72, unknown 45.9
1816 Male, age 51, unknown 43.6
1817 Female, age 42, unknown 35.8
1815 Male, age 53, unknown 33.9
2667 Female, age 75, unknown 32.7
2316 Male, age 76, right hemisphere 30.4
2224 Female, age 72, unknown 29.6
2273 Male, age 74, both hemispheres 22.8
2825 Male, age 18, unknown 18.1
2407 Male, age 75, both hemispheres 15.8
Red nucleus
nTPM: 16.3
2785 Male, age 18, unknown 35.5
2588 Male, age 74, left hemisphere 21.3
2584 Male, age 75, left hemisphere 21.2
2227 Male, age 72, unknown 19.5
2503 Female, age 72, unknown 17.1
1904 Male, age 53, unknown 16.2
2769 Male, age 72, unknown 15.6
1954 Female, age 42, unknown 14.1
2725 Female, age 75, unknown 11.5
1865 Male, age 51, unknown 10.4
2823 Male, age 76, right hemisphere 8.1
1821 Female, age 72, unknown 5.3
Substantia nigra
nTPM: 19.4
1889 Female, age 72, unknown 29.5
1916 Female, age 42, unknown 28.6
2665 Male, age 74, both hemispheres 26.2
1941 Male, age 53, unknown 26.0
2590 Female, age 75, unknown 19.0
1851 Male, age 51, unknown 15.5
2583 Male, age 75, right hemisphere 15.4
2699 Male, age 18, unknown 14.0
2409 Female, age 72, unknown 13.0
2241 Male, age 72, unknown 6.6
Superior colliculus
nTPM: 27.3
2261 Male, age 18, unknown 47.8
1796 Male, age 53, unknown 41.3
1913 Female, age 42, unknown 29.7
2668 Female, age 75, unknown 26.7
2087 Female, age 72, unknown 26.4
2664 Male, age 75, both hemispheres 25.7
1995 Male, age 72, unknown 22.7
1839 Male, age 51, unknown 20.5
2587 Male, age 74, left hemisphere 19.5
1895 Male, age 76, right hemisphere 12.5
Ventral tegmental area
nTPM: 22.0
1942 Male, age 51, unknown 27.5
1915 Female, age 42, unknown 25.3
2218 Male, age 76, both hemispheres 24.1
2021 Male, age 53, unknown 20.7
2223 Female, age 72, unknown 18.3
2410 Female, age 72, unknown 16.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 55.8
Min nTPM: 1.7
Std nTPM: 9.8
Median nTPM: 20.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 45.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 43.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 39.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 39.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 37.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 36.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 35.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 34.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.1
FF:10158-103A5 76 years, female 1.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.7
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Female 1.3
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.4
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.4
Sample A Female 0.5
Sample B Female 0.4
Sample C Male 1.2
Sample D Male 0.8
Periaqueductal gray
nTPM: 0.3
Samples: 3

Max nTPM: 0.3
Min nTPM: 0.2
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 0.3
Superior colliculi
nTPM: 0.6
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 0.6
Sample C Male 0.6
Sample D Male 0.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.4
Sample A Male 1.0
Sample B Male 0.5
Sample C Female 0.9
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75990859 Antisense, RP_060608_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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