MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:25.9 nTPM
GTEx:9.4 nTPM
FANTOM5:60.7 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:17.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2019 Male, age 18, unknown 20.2
1833 Male, age 53, unknown 19.8
1830 Male, age 51, unknown 19.7
2666 Male, age 74, left hemisphere 16.7
1827 Male, age 72, unknown 15.1
2219 Male, age 76, both hemispheres 15.1
1870 Female, age 42, unknown 14.4
2828 Female, age 72, unknown 13.9
2411 Female, age 72, unknown 13.7
2586 Male, age 75, left hemisphere 10.5
Dorsal raphe nucleus
nTPM: 18.5
2016 Female, age 72, unknown 23.2
2298 Female, age 72, unknown 20.6
1828 Male, age 53, unknown 19.4
2750 Male, age 76, both hemispheres 15.8
2047 Male, age 72, unknown 13.5
Inferior colliculus
nTPM: 14.9
1890 Male, age 53, unknown 17.0
2849 Male, age 72, unknown 16.8
2097 Female, age 72, unknown 13.4
1848 Female, age 42, unknown 12.6
Median raphe nucleus
nTPM: 14.4
2220 Male, age 76, midline 14.4
Periaquaductal grey, anterior
nTPM: 17.2
1947 Male, age 18, unknown 20.1
2502 Female, age 75, unknown 16.2
1795 Male, age 51, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 22.4
2850 Male, age 76, both hemispheres 36.9
1831 Male, age 72, unknown 18.8
1840 Male, age 53, unknown 17.5
2464 Female, age 72, unknown 16.6
Periaquaductal grey, lateral
nTPM: 25.9
2140 Male, age 76, both hemispheres 34.5
2272 Male, age 74, both hemispheres 27.7
2053 Male, age 18, unknown 15.5
Pretectal area
nTPM: 17.1
2273 Male, age 74, both hemispheres 28.4
1815 Male, age 53, unknown 19.7
2667 Female, age 75, unknown 19.4
2224 Female, age 72, unknown 17.7
2825 Male, age 18, unknown 17.4
2007 Male, age 72, unknown 14.9
2407 Male, age 75, both hemispheres 14.8
1817 Female, age 42, unknown 14.7
2316 Male, age 76, right hemisphere 14.7
1944 Female, age 72, unknown 14.3
1816 Male, age 51, unknown 12.0
Red nucleus
nTPM: 18.2
2823 Male, age 76, right hemisphere 25.7
1865 Male, age 51, unknown 22.2
2503 Female, age 72, unknown 20.7
2725 Female, age 75, unknown 19.6
1904 Male, age 53, unknown 19.1
2227 Male, age 72, unknown 17.9
1954 Female, age 42, unknown 17.7
2785 Male, age 18, unknown 16.6
2769 Male, age 72, unknown 16.5
2588 Male, age 74, left hemisphere 15.3
1821 Female, age 72, unknown 14.6
2584 Male, age 75, left hemisphere 12.7
Substantia nigra
nTPM: 16.5
2409 Female, age 72, unknown 29.9
2241 Male, age 72, unknown 19.7
2699 Male, age 18, unknown 18.5
2590 Female, age 75, unknown 15.3
1941 Male, age 53, unknown 14.9
1889 Female, age 72, unknown 14.8
1851 Male, age 51, unknown 14.5
1916 Female, age 42, unknown 13.7
2665 Male, age 74, both hemispheres 12.1
2583 Male, age 75, right hemisphere 11.6
Superior colliculus
nTPM: 16.9
1895 Male, age 76, right hemisphere 23.7
1995 Male, age 72, unknown 22.7
2587 Male, age 74, left hemisphere 18.4
1913 Female, age 42, unknown 17.8
2261 Male, age 18, unknown 15.4
1839 Male, age 51, unknown 15.2
2087 Female, age 72, unknown 15.1
2664 Male, age 75, both hemispheres 14.3
2668 Female, age 75, unknown 14.3
1796 Male, age 53, unknown 12.4
Ventral tegmental area
nTPM: 13.9
1942 Male, age 51, unknown 16.4
2410 Female, age 72, unknown 14.8
2218 Male, age 76, both hemispheres 14.0
1915 Female, age 42, unknown 13.9
2021 Male, age 53, unknown 12.3
2223 Female, age 72, unknown 12.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 36.5
Min nTPM: 2.0
Std nTPM: 5.1
Median nTPM: 8.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 36.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 27.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 24.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 21.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 20.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 20.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 18.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 18.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 18.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 18.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 18.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.7
FF:10158-103A5 76 years, female 60.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 12.0
Min nTPM: 6.4
Sample A Female 6.8
Sample B Female 12.0
Sample C Male 6.4
Sample D Male 9.5
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 14.9
Min nTPM: 7.7
Sample A Female 9.2
Sample B Female 14.9
Sample C Male 7.7
Sample D Male 8.5
Periaqueductal gray
nTPM: 11.6
Samples: 3

Max nTPM: 13.2
Min nTPM: 8.4
Sample B Female 13.2
Sample C Male 8.4
Sample D Male 13.2
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 9.4
Sample C Male 9.2
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 17.7
Min nTPM: 16.2
Sample A Male 16.2
Sample B Male 17.5
Sample C Female 17.7
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
378544 Antisense, RP_040625_01_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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