HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:337.5 nTPM
HPA Brain:546.4 nTPM
GTEx:337.5 nTPM
FANTOM5:295.7 Scaled Tags Per Million
Pig:566.7 nTPM
Mouse:417.9 nTPM
Allen mouse:23.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049290Antibody HPA057668Antibody CAB012979
Glial cells LowMediumLow
Neuronal cells MediumMediumMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 546.4
Sample id Sample description nTPM
Hippocampus
nTPM: 414.2
1898 Male, age 80, left hemisphere 506.6
2621 Female, age 67, right hemisphere 451.1
1855 Male, age 76, left hemisphere 444.1
2148 Female, age 91, left hemisphere 383.4
2529 Female, age 94, left hemisphere 358.2
1911 Female, age 85, right hemisphere 341.7
Dentate gyrus
nTPM: 420.7
1927 Female, age 91, both hemispheres 500.2
2010 Male, age 76, both hemispheres 444.2
2530 Female, age 94, left hemisphere 441.2
2246 Female, age 85, both hemispheres 397.2
2531 Female, age 67, both hemispheres 379.1
2528 Male, age 74, both hemispheres 362.4
Entorhinal gyrus
nTPM: 454.1
2764 Male, age 80, right hemisphere 542.8
2613 Female, age 94, left hemisphere 522.6
1938 Female, age 85, left hemisphere 494.7
1787 Male, age 76, left hemisphere 426.1
2686 Male, age 75, right hemisphere 383.2
2117 Female, age 91, right hemisphere 355.3
Hippocampus, CA1
nTPM: 459.3
2749 Male, age 80, left hemisphere 674.4
2045 Male, age 76, both hemispheres 470.9
1873 Female, age 85, both hemispheres 462.7
2527 Male, age 74, both hemispheres 348.3
2082 Female, age 91, right hemisphere 340.1
Hippocampus, CA2
nTPM: 417.4
1892 Male, age 76, both hemispheres 568.0
1963 Male, age 80, left hemisphere 463.7
2437 Female, age 94, left hemisphere 401.1
1940 Female, age 85, left hemisphere 383.2
2249 Male, age 74, both hemispheres 355.9
2113 Female, age 91, right hemisphere 332.4
Hippocampus, CA3
nTPM: 440.1
2137 Male, age 80, left hemisphere 554.7
2620 Female, age 94, left hemisphere 502.7
1867 Male, age 76, both hemispheres 471.5
2861 Female, age 67, both hemispheres 382.7
1891 Female, age 85, both hemispheres 378.5
2436 Male, age 74, both hemispheres 350.6
Parahippocampal cortex
nTPM: 436.8
1850 Male, age 80, both hemispheres 574.3
2245 Female, age 91, both hemispheres 474.7
2532 Female, age 72, left hemisphere 464.4
1933 Female, age 85, both hemispheres 449.9
1990 Female, age 91, right hemisphere 447.4
2693 Female, age 94, both hemispheres 439.3
2250 Female, age 67, right hemisphere 398.5
2622 Female, age 67, right hemisphere 389.3
2692 Male, age 74, both hemispheres 371.1
2018 Male, age 76, both hemispheres 359.3
Perirhinal gyrus
nTPM: 546.4
1847 Female, age 91, left hemisphere 637.9
1794 Male, age 80, right hemisphere 587.8
1841 Female, age 85, right hemisphere 547.7
2521 Female, age 94, right hemisphere 489.9
2848 Male, age 76, right hemisphere 468.5
Subiculum
nTPM: 399.4
1901 Male, age 80, both hemispheres 454.4
2438 Female, age 94, left hemisphere 445.0
1977 Female, age 85, both hemispheres 435.0
2042 Male, age 76, both hemispheres 381.8
2619 Male, age 74, both hemispheres 379.1
2729 Female, age 91, right hemisphere 300.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 337.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 337.5
Samples: 197

Max nTPM: 573.9
Min nTPM: 144.1
Std nTPM: 86.4
Median nTPM: 332.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 573.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 559.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 551.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 546.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 539.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 515.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 513.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 507.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 491.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 487.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 473.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 295.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 295.7
FF:10169-103B7 60 years, female 304.3
FF:10153-102I9 76 years, female 287.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 566.7
Pig sample Sample description nTPM
Subiculum
nTPM: 526.6
Samples: 4

Max nTPM: 693.2
Min nTPM: 437.5
Sample A Female 693.2
Sample B Female 475.4
Sample C Male 500.4
Sample D Male 437.5
Dorsal hippocampus
nTPM: 566.8
Samples: 4

Max nTPM: 714.5
Min nTPM: 434.1
Sample A Female 714.5
Sample B Female 593.0
Sample C Male 525.4
Sample D Male 434.1
Entorhinal cortex
nTPM: 543.6
Samples: 4

Max nTPM: 626.7
Min nTPM: 485.1
Sample A Female 626.7
Sample B Female 508.0
Sample C Male 554.5
Sample D Male 485.1
Ventral hippocampus
nTPM: 562.4
Samples: 4

Max nTPM: 711.6
Min nTPM: 376.5
Sample A Female 561.2
Sample B Female 376.5
Sample C Male 711.6
Sample D Male 600.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 417.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 418.0
Samples: 4

Max nTPM: 481.7
Min nTPM: 382.7
Sample A Male 382.7
Sample B Male 392.0
Sample C Female 415.4
Sample D Female 481.7
Hippocampal formation
nTPM: 414.6
Samples: 4

Max nTPM: 440.3
Min nTPM: 384.5
Sample A Male 440.3
Sample B Male 405.6
Sample C Female 428.1
Sample D Female 384.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.6
74357589 Antisense, RP_060117_01_A05, Mouse strain C57BL/6J (56 days, male) 23.6

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