MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.0 nTPM
HPA Brain:42.7 nTPM
GTEx:41.0 nTPM
FANTOM5:24.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
2219 Male, age 76, both hemispheres 44.2
2666 Male, age 74, left hemisphere 39.0
1827 Male, age 72, unknown 33.7
2586 Male, age 75, left hemisphere 25.1
1870 Female, age 42, unknown 25.0
2411 Female, age 72, unknown 23.6
1830 Male, age 51, unknown 22.6
1833 Male, age 53, unknown 22.4
2828 Female, age 72, unknown 22.4
2019 Male, age 18, unknown 17.5
Dorsal raphe nucleus
nTPM: 20.0
1828 Male, age 53, unknown 23.7
2047 Male, age 72, unknown 21.4
2750 Male, age 76, both hemispheres 18.9
2298 Female, age 72, unknown 18.4
2016 Female, age 72, unknown 17.8
Inferior colliculus
nTPM: 29.1
2849 Male, age 72, unknown 42.3
2097 Female, age 72, unknown 25.4
1848 Female, age 42, unknown 25.2
1890 Male, age 53, unknown 23.5
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Periaquaductal grey, anterior
nTPM: 27.8
1795 Male, age 51, unknown 28.8
2502 Female, age 75, unknown 28.6
1947 Male, age 18, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 29.8
2850 Male, age 76, both hemispheres 35.8
1840 Male, age 53, unknown 28.4
2464 Female, age 72, unknown 28.3
1831 Male, age 72, unknown 26.8
Periaquaductal grey, lateral
nTPM: 25.2
2140 Male, age 76, both hemispheres 27.3
2053 Male, age 18, unknown 26.5
2272 Male, age 74, both hemispheres 21.8
Pretectal area
nTPM: 27.3
2825 Male, age 18, unknown 32.7
1816 Male, age 51, unknown 31.5
2407 Male, age 75, both hemispheres 30.3
2224 Female, age 72, unknown 29.8
1944 Female, age 72, unknown 29.7
1817 Female, age 42, unknown 28.7
1815 Male, age 53, unknown 27.5
2007 Male, age 72, unknown 27.4
2273 Male, age 74, both hemispheres 25.5
2316 Male, age 76, right hemisphere 18.8
2667 Female, age 75, unknown 18.0
Red nucleus
nTPM: 22.9
2725 Female, age 75, unknown 43.1
2503 Female, age 72, unknown 26.8
2588 Male, age 74, left hemisphere 25.4
1954 Female, age 42, unknown 24.0
2584 Male, age 75, left hemisphere 22.1
1865 Male, age 51, unknown 20.7
2785 Male, age 18, unknown 20.1
2227 Male, age 72, unknown 19.7
1821 Female, age 72, unknown 19.0
2769 Male, age 72, unknown 18.7
2823 Male, age 76, right hemisphere 17.9
1904 Male, age 53, unknown 17.1
Substantia nigra
nTPM: 22.6
1941 Male, age 53, unknown 31.0
2699 Male, age 18, unknown 25.5
1889 Female, age 72, unknown 23.4
2409 Female, age 72, unknown 23.0
2241 Male, age 72, unknown 22.0
1916 Female, age 42, unknown 21.0
2665 Male, age 74, both hemispheres 20.5
2590 Female, age 75, unknown 20.2
1851 Male, age 51, unknown 20.1
2583 Male, age 75, right hemisphere 19.7
Superior colliculus
nTPM: 24.1
2261 Male, age 18, unknown 29.0
1796 Male, age 53, unknown 27.6
2664 Male, age 75, both hemispheres 26.9
2587 Male, age 74, left hemisphere 26.8
1839 Male, age 51, unknown 26.7
2087 Female, age 72, unknown 25.4
1895 Male, age 76, right hemisphere 22.3
1913 Female, age 42, unknown 20.0
2668 Female, age 75, unknown 19.4
1995 Male, age 72, unknown 16.9
Ventral tegmental area
nTPM: 23.9
2218 Male, age 76, both hemispheres 28.1
2223 Female, age 72, unknown 25.2
1942 Male, age 51, unknown 24.3
1915 Female, age 42, unknown 24.1
2021 Male, age 53, unknown 23.3
2410 Female, age 72, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.0
Samples: 139

Max nTPM: 109.5
Min nTPM: 15.6
Std nTPM: 13.5
Median nTPM: 39.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 71.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 70.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 65.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 62.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 61.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 61.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 60.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

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