MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.5 nTPM
HPA Brain:10.4 nTPM
GTEx:100.5 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:63.1 nTPM
Mouse:106.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.4
1827 Male, age 72, unknown 9.7
1870 Female, age 42, unknown 9.0
2411 Female, age 72, unknown 8.5
2019 Male, age 18, unknown 8.4
2828 Female, age 72, unknown 8.1
1833 Male, age 53, unknown 6.9
2219 Male, age 76, both hemispheres 6.7
1830 Male, age 51, unknown 5.9
2666 Male, age 74, left hemisphere 5.9
2586 Male, age 75, left hemisphere 4.9
Dorsal raphe nucleus
nTPM: 8.4
2047 Male, age 72, unknown 9.8
2298 Female, age 72, unknown 9.5
2750 Male, age 76, both hemispheres 8.6
1828 Male, age 53, unknown 8.0
2016 Female, age 72, unknown 6.2
Inferior colliculus
nTPM: 7.1
2849 Male, age 72, unknown 7.9
1890 Male, age 53, unknown 7.3
2097 Female, age 72, unknown 7.2
1848 Female, age 42, unknown 6.1
Median raphe nucleus
nTPM: 10.4
2220 Male, age 76, midline 10.4
Periaquaductal grey, anterior
nTPM: 8.9
1947 Male, age 18, unknown 10.0
1795 Male, age 51, unknown 9.1
2502 Female, age 75, unknown 7.6
Periaquaductal grey, dorsal
nTPM: 7.7
2850 Male, age 76, both hemispheres 8.5
2464 Female, age 72, unknown 8.1
1840 Male, age 53, unknown 7.6
1831 Male, age 72, unknown 6.6
Periaquaductal grey, lateral
nTPM: 8.2
2272 Male, age 74, both hemispheres 9.2
2053 Male, age 18, unknown 8.7
2140 Male, age 76, both hemispheres 6.5
Pretectal area
nTPM: 9.3
1816 Male, age 51, unknown 11.8
1944 Female, age 72, unknown 11.6
1817 Female, age 42, unknown 11.4
2007 Male, age 72, unknown 10.5
2407 Male, age 75, both hemispheres 9.8
1815 Male, age 53, unknown 9.2
2667 Female, age 75, unknown 9.2
2224 Female, age 72, unknown 7.6
2273 Male, age 74, both hemispheres 7.6
2825 Male, age 18, unknown 7.3
2316 Male, age 76, right hemisphere 6.1
Red nucleus
nTPM: 7.2
2725 Female, age 75, unknown 10.3
2588 Male, age 74, left hemisphere 8.0
2584 Male, age 75, left hemisphere 7.7
2823 Male, age 76, right hemisphere 7.6
1821 Female, age 72, unknown 7.4
1954 Female, age 42, unknown 7.4
1904 Male, age 53, unknown 7.1
1865 Male, age 51, unknown 6.7
2769 Male, age 72, unknown 6.3
2227 Male, age 72, unknown 6.1
2785 Male, age 18, unknown 5.9
2503 Female, age 72, unknown 5.8
Substantia nigra
nTPM: 8.6
1916 Female, age 42, unknown 12.3
1889 Female, age 72, unknown 9.8
2409 Female, age 72, unknown 9.8
1851 Male, age 51, unknown 9.6
2699 Male, age 18, unknown 8.9
1941 Male, age 53, unknown 8.7
2241 Male, age 72, unknown 8.1
2583 Male, age 75, right hemisphere 6.6
2665 Male, age 74, both hemispheres 6.2
2590 Female, age 75, unknown 6.1
Superior colliculus
nTPM: 7.4
2587 Male, age 74, left hemisphere 9.3
1796 Male, age 53, unknown 8.3
2668 Female, age 75, unknown 8.0
2087 Female, age 72, unknown 7.7
1895 Male, age 76, right hemisphere 7.3
2261 Male, age 18, unknown 7.3
1913 Female, age 42, unknown 7.2
2664 Male, age 75, both hemispheres 6.9
1839 Male, age 51, unknown 6.4
1995 Male, age 72, unknown 5.8
Ventral tegmental area
nTPM: 7.7
2223 Female, age 72, unknown 9.0
1915 Female, age 42, unknown 8.7
2410 Female, age 72, unknown 7.6
1942 Male, age 51, unknown 7.4
2021 Male, age 53, unknown 7.0
2218 Male, age 76, both hemispheres 6.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.5
Samples: 139

Max nTPM: 176.9
Min nTPM: 46.3
Std nTPM: 25.7
Median nTPM: 95.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 176.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 165.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 164.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 155.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 154.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 153.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 151.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 149.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 146.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 141.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 140.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.4
Samples: 4

Max nTPM: 78.3
Min nTPM: 41.2
Sample A Female 78.3
Sample B Female 47.0
Sample C Male 67.0
Sample D Male 41.2
Midbrain
nTPM: 57.9
Samples: 4

Max nTPM: 66.5
Min nTPM: 50.0
Sample A Female 63.9
Sample B Female 66.5
Sample C Male 50.0
Sample D Male 51.3
Periaqueductal gray
nTPM: 63.1
Samples: 3

Max nTPM: 71.9
Min nTPM: 53.8
Sample B Female 63.5
Sample C Male 71.9
Sample D Male 53.8
Superior colliculi
nTPM: 54.9
Samples: 4

Max nTPM: 73.3
Min nTPM: 36.3
Sample A Female 73.3
Sample B Female 36.3
Sample C Male 55.3
Sample D Male 54.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 116.0
Min nTPM: 101.1
Sample A Male 116.0
Sample B Male 106.5
Sample C Female 101.1
Sample D Female 101.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68196924 Antisense, RP_041116_01_E12, Mouse strain C57BL/6J (56 days, male) 0.7

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