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PFDN6
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  • PFDN6
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PFDN6
Synonyms H2-KE2, HKE2, KE-2, PFD6
Gene descriptioni

Full gene name according to HGNC.

Prefoldin subunit 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband p21.32
Chromosome location (bp) 33289302 - 33298401
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000204220 (version 109)
Entrez gene 10471
HGNC HGNC:4926
UniProt O15212 (UniProt - Evidence at protein level)
neXtProt NX_O15212
GeneCards PFDN6
Antibodypedia PFDN6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chaperone
Gene summary (Entrez)i

Useful information about the gene from Entrez

PFDN6 is a subunit of the heteromeric prefoldin complex that chaperones nascent actin (see MIM 102560) and alpha- and beta-tubulin (see MIM 602529 and MIM 191130, respectively) chains pending their transfer to the cytosolic chaperonin containing TCP1 (MIM 186980) (CCT) complex (Hansen et al., 1999).[supplied by OMIM, Jul 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PFDN6-201
ENSP00000363734
ENST00000374606
O15212
[Direct mapping] Prefoldin subunit 6
Show all
Q5STK2
[Target identity:100%; Query identity:100%] Prefoldin subunit 6, isoform CRA_b; cDNA, FLJ92435, Homo sapiens HLA class II region expressed gene KE2 (HKE2), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001540 [amyloid-beta binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0006457 [protein folding]
GO:0016272 [prefoldin complex]
GO:0050821 [protein stabilization]
GO:0051082 [unfolded protein binding]
GO:0051087 [chaperone binding]
GO:0051131 [chaperone-mediated protein complex assembly]
GO:0101031 [chaperone complex]
GO:1905907 [negative regulation of amyloid fibril formation]
GO:1990062 [RPAP3/R2TP/prefoldin-like complex]
Show all
129 aa
14.6 kDa
No 0
PFDN6-202
ENSP00000363735
ENST00000374607
O15212
[Direct mapping] Prefoldin subunit 6
Show all
Q5STK2
[Target identity:100%; Query identity:100%] Prefoldin subunit 6, isoform CRA_b; cDNA, FLJ92435, Homo sapiens HLA class II region expressed gene KE2 (HKE2), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001540 [amyloid-beta binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0006457 [protein folding]
GO:0016272 [prefoldin complex]
GO:0050821 [protein stabilization]
GO:0051082 [unfolded protein binding]
GO:0051087 [chaperone binding]
GO:0051131 [chaperone-mediated protein complex assembly]
GO:0101031 [chaperone complex]
GO:1905907 [negative regulation of amyloid fibril formation]
GO:1990062 [RPAP3/R2TP/prefoldin-like complex]
Show all
129 aa
14.6 kDa
No 0
PFDN6-203
ENSP00000363738
ENST00000374610
O15212
[Direct mapping] Prefoldin subunit 6
Show all
Q5STK2
[Target identity:100%; Query identity:100%] Prefoldin subunit 6, isoform CRA_b; cDNA, FLJ92435, Homo sapiens HLA class II region expressed gene KE2 (HKE2), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001540 [amyloid-beta binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0006457 [protein folding]
GO:0016272 [prefoldin complex]
GO:0050821 [protein stabilization]
GO:0051082 [unfolded protein binding]
GO:0051087 [chaperone binding]
GO:0051131 [chaperone-mediated protein complex assembly]
GO:0101031 [chaperone complex]
GO:1905907 [negative regulation of amyloid fibril formation]
GO:1990062 [RPAP3/R2TP/prefoldin-like complex]
Show all
129 aa
14.6 kDa
No 0
PFDN6-204
ENSP00000378563
ENST00000395131
O15212
[Direct mapping] Prefoldin subunit 6
Show all
Q5STK2
[Target identity:100%; Query identity:100%] Prefoldin subunit 6, isoform CRA_b; cDNA, FLJ92435, Homo sapiens HLA class II region expressed gene KE2 (HKE2), mRNA
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001540 [amyloid-beta binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0006457 [protein folding]
GO:0016272 [prefoldin complex]
GO:0050821 [protein stabilization]
GO:0051082 [unfolded protein binding]
GO:0051087 [chaperone binding]
GO:0051131 [chaperone-mediated protein complex assembly]
GO:0101031 [chaperone complex]
GO:1905907 [negative regulation of amyloid fibril formation]
GO:1990062 [RPAP3/R2TP/prefoldin-like complex]
Show all
129 aa
14.6 kDa
No 0
PFDN6-206
ENSP00000420135
ENST00000463584
A2AB88
[Direct mapping] Prefoldin subunit 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006457 [protein folding]
GO:0016272 [prefoldin complex]
GO:0050821 [protein stabilization]
GO:0051082 [unfolded protein binding]
Show all
103 aa
11.6 kDa
No 0

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