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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
65.0
nTPM
Monaco:
68.4
nTPM
Schmiedel:
76.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
65.0
HPA sample
nTPM
gdT-cell nTPM: 64.9
Samples: 6
Max nTPM: 105.9
Min nTPM: 46.0
P10809_1007
70.3
P10809_1022
105.9
P10809_1041
55.6
P10809_1060
46.0
P10809_1077
55.1
P10809_1098
56.7
MAIT T-cell nTPM: 55.7
Samples: 6
Max nTPM: 75.6
Min nTPM: 45.9
P10809_1006
62.0
P10809_1024
75.6
P10809_1043
49.4
P10809_1062
52.5
P10809_1083
48.9
P10809_1097
45.9
Memory CD4 T-cell nTPM: 52.7
Samples: 6
Max nTPM: 78.5
Min nTPM: 39.7
P10809_1014
65.4
P10809_1026
78.5
P10809_1045
40.4
P10809_1064
43.2
P10809_1086
49.2
P10809_1113
39.7
Memory CD8 T-cell nTPM: 57.6
Samples: 5
Max nTPM: 76.4
Min nTPM: 44.4
P10809_1012
67.9
P10809_1027
76.4
P10809_1046
52.0
P10809_1065
47.5
P10809_1111
44.4
Naive CD4 T-cell nTPM: 57.7
Samples: 6
Max nTPM: 95.9
Min nTPM: 42.4
P10809_1015
65.1
P10809_1030
95.9
P10809_1049
43.8
P10809_1068
44.5
P10809_1085
54.3
P10809_1112
42.4
Naive CD8 T-cell nTPM: 58.4
Samples: 6
Max nTPM: 73.5
Min nTPM: 47.9
P10809_1016
73.5
P10809_1031
64.0
P10809_1050
55.0
P10809_1069
51.5
P10809_1087
58.6
P10809_1110
47.9
T-reg nTPM: 58.4
Samples: 6
Max nTPM: 84.6
Min nTPM: 36.2
P10809_1018
64.4
P10809_1037
84.6
P10809_1056
52.0
P10809_1075
57.0
P10809_1094
56.2
P10809_1106
36.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
68.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 45.2
Samples: 4
Max nTPM: 78.5
Min nTPM: 19.0
RHH5202_R3573
40.5
RHH5230_R3602
19.0
RHH5259_R3631
42.7
RHH5288_R3660
78.5
Effector memory CD8 T-cell nTPM: 46.0
Samples: 4
Max nTPM: 59.2
Min nTPM: 39.6
RHH5203_R3574
59.2
RHH5231_R3603
40.4
RHH5260_R3632
44.7
RHH5289_R3661
39.6
MAIT T-cell nTPM: 58.5
Samples: 4
Max nTPM: 86.2
Min nTPM: 40.9
RHH5233_R3605
53.6
RHH5205_R3576
40.9
RHH5262_R3634
53.1
RHH5297_R3663
86.2
Memory CD4 T-cell TFH nTPM: 64.1
Samples: 4
Max nTPM: 79.1
Min nTPM: 53.6
RHH5300_R3666
58.8
RHH5236_R3608
79.1
RHH5265_R3637
53.6
RHH5208_R3579
64.7
Memory CD4 T-cell Th1 nTPM: 50.1
Samples: 4
Max nTPM: 73.8
Min nTPM: 33.3
RHH5210_R3581
53.9
RHH5302_R3668
73.8
RHH5238_R3610
33.3
RHH5267_R3639
39.3
Memory CD4 T-cell Th1/Th17 nTPM: 52.0
Samples: 4
Max nTPM: 83.7
Min nTPM: 14.9
RHH5303_R3669
83.7
RHH5211_R3582
64.3
RHH5239_R3611
14.9
RHH5268_R3640
44.9
Memory CD4 T-cell Th17 nTPM: 41.0
Samples: 4
Max nTPM: 50.5
Min nTPM: 30.6
RHH5304_R3670
50.5
RHH5212_R3583
49.5
RHH5240_R3612
30.6
RHH5269_R3641
33.4
Memory CD4 T-cell Th2 nTPM: 47.8
Samples: 4
Max nTPM: 69.3
Min nTPM: 29.1
RHH5305_R3671
69.3
RHH5213_R3584
48.8
RHH5241_R3613
43.9
RHH5270_R3642
29.1
Naive CD4 T-cell nTPM: 58.6
Samples: 4
Max nTPM: 70.1
Min nTPM: 43.1
RHH5306_R3672
67.3
RHH5214_R3585
70.1
RHH5242_R3614
53.7
RHH5271_R3643
43.1
Naive CD8 T-cell nTPM: 39.6
Samples: 4
Max nTPM: 56.4
Min nTPM: 12.9
RHH5201_R3572
38.3
RHH5229_R3601
12.9
RHH5258_R3630
56.4
RHH5287_R3659
50.8
Non-Vd2 gdTCR nTPM: 67.3
Samples: 4
Max nTPM: 100.3
Min nTPM: 25.2
RHH5235_R3607
25.2
RHH5264_R3636
100.3
RHH5207_R3578
58.7
RHH5299_R3665
84.9
T-reg nTPM: 64.4
Samples: 4
Max nTPM: 100.1
Min nTPM: 41.2
RHH5301_R3667
100.1
RHH5237_R3609
74.3
RHH5266_R3638
42.0
RHH5209_R3580
41.2
Terminal effector memory CD4 T-cell nTPM: 52.7
Samples: 2
Max nTPM: 73.4
Min nTPM: 31.9
RHH5243_R3615
31.9
RHH5272_R3644
73.4
Terminal effector memory CD8 T-cell nTPM: 68.4
Samples: 4
Max nTPM: 99.7
Min nTPM: 43.1
RHH5232_R3604
72.1
RHH5204_R3575
99.7
RHH5261_R3633
43.1
RHH5296_R3662
58.5
Vd2 gdTCR nTPM: 65.9
Samples: 4
Max nTPM: 106.0
Min nTPM: 32.6
RHH5234_R3606
32.6
RHH5206_R3577
106.0
RHH5263_R3635
34.6
RHH5298_R3664
90.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
