MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.6 nTPM
HPA Brain:21.0 nTPM
GTEx:7.6 nTPM
FANTOM5:56.5 Scaled Tags Per Million
Pig:124.5 nTPM
Mouse:24.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
2219 Male, age 76, both hemispheres 23.7
2666 Male, age 74, left hemisphere 14.3
2828 Female, age 72, unknown 13.8
2586 Male, age 75, left hemisphere 13.3
1827 Male, age 72, unknown 12.5
1830 Male, age 51, unknown 11.2
1870 Female, age 42, unknown 8.6
1833 Male, age 53, unknown 7.8
2019 Male, age 18, unknown 7.2
2411 Female, age 72, unknown 5.8
Dorsal raphe nucleus
nTPM: 7.1
2750 Male, age 76, both hemispheres 14.6
2016 Female, age 72, unknown 9.1
2047 Male, age 72, unknown 6.7
1828 Male, age 53, unknown 4.4
2298 Female, age 72, unknown 0.5
Inferior colliculus
nTPM: 8.5
1848 Female, age 42, unknown 11.9
1890 Male, age 53, unknown 11.7
2849 Male, age 72, unknown 6.1
2097 Female, age 72, unknown 4.3
Median raphe nucleus
nTPM: 4.9
2220 Male, age 76, midline 4.9
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 15.9
1795 Male, age 51, unknown 15.8
2502 Female, age 75, unknown 3.0
Periaquaductal grey, dorsal
nTPM: 8.8
1840 Male, age 53, unknown 12.1
1831 Male, age 72, unknown 11.2
2464 Female, age 72, unknown 11.1
2850 Male, age 76, both hemispheres 0.8
Periaquaductal grey, lateral
nTPM: 4.9
2053 Male, age 18, unknown 9.9
2272 Male, age 74, both hemispheres 3.9
2140 Male, age 76, both hemispheres 0.7
Pretectal area
nTPM: 21.0
2667 Female, age 75, unknown 76.0
1944 Female, age 72, unknown 33.4
1816 Male, age 51, unknown 30.6
1817 Female, age 42, unknown 22.3
1815 Male, age 53, unknown 20.4
2007 Male, age 72, unknown 16.9
2224 Female, age 72, unknown 11.8
2316 Male, age 76, right hemisphere 10.6
2825 Male, age 18, unknown 4.1
2273 Male, age 74, both hemispheres 3.1
2407 Male, age 75, both hemispheres 1.4
Red nucleus
nTPM: 8.2
2785 Male, age 18, unknown 13.7
2588 Male, age 74, left hemisphere 12.5
1821 Female, age 72, unknown 12.0
1954 Female, age 42, unknown 10.1
2823 Male, age 76, right hemisphere 9.5
2503 Female, age 72, unknown 9.4
1904 Male, age 53, unknown 7.3
2227 Male, age 72, unknown 7.3
1865 Male, age 51, unknown 7.1
2769 Male, age 72, unknown 6.1
2725 Female, age 75, unknown 2.6
2584 Male, age 75, left hemisphere 0.7
Substantia nigra
nTPM: 13.3
2665 Male, age 74, both hemispheres 28.1
1916 Female, age 42, unknown 19.3
2583 Male, age 75, right hemisphere 17.9
1889 Female, age 72, unknown 16.7
2409 Female, age 72, unknown 13.6
1941 Male, age 53, unknown 11.1
1851 Male, age 51, unknown 9.0
2241 Male, age 72, unknown 8.2
2699 Male, age 18, unknown 6.4
2590 Female, age 75, unknown 2.7
Superior colliculus
nTPM: 15.3
2668 Female, age 75, unknown 46.4
1895 Male, age 76, right hemisphere 27.5
2087 Female, age 72, unknown 18.7
1796 Male, age 53, unknown 11.9
1913 Female, age 42, unknown 11.6
2261 Male, age 18, unknown 11.6
2664 Male, age 75, both hemispheres 10.2
1995 Male, age 72, unknown 7.9
1839 Male, age 51, unknown 4.0
2587 Male, age 74, left hemisphere 3.5
Ventral tegmental area
nTPM: 12.2
2410 Female, age 72, unknown 17.5
2218 Male, age 76, both hemispheres 16.0
1915 Female, age 42, unknown 14.4
2223 Female, age 72, unknown 11.2
1942 Male, age 51, unknown 9.8
2021 Male, age 53, unknown 4.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.6
Samples: 139

Max nTPM: 29.6
Min nTPM: 0.8
Std nTPM: 5.4
Median nTPM: 6.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 27.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 25.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 20.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 20.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 19.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 18.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.5
FF:10158-103A5 76 years, female 56.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 124.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.9
Samples: 4

Max nTPM: 122.6
Min nTPM: 67.4
Sample A Female 99.9
Sample B Female 67.4
Sample C Male 97.5
Sample D Male 122.6
Midbrain
nTPM: 124.5
Samples: 4

Max nTPM: 149.6
Min nTPM: 96.3
Sample A Female 149.6
Sample B Female 96.3
Sample C Male 144.4
Sample D Male 107.8
Periaqueductal gray
nTPM: 96.3
Samples: 3

Max nTPM: 98.1
Min nTPM: 93.7
Sample B Female 98.1
Sample C Male 93.7
Sample D Male 97.2
Superior colliculi
nTPM: 111.3
Samples: 4

Max nTPM: 137.0
Min nTPM: 57.6
Sample A Female 119.4
Sample B Female 57.6
Sample C Male 137.0
Sample D Male 131.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 26.8
Min nTPM: 22.4
Sample A Male 26.8
Sample B Male 22.4
Sample C Female 25.7
Sample D Female 24.3

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