MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:35.1 nTPM
GTEx:23.7 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:30.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
2586 Male, age 75, left hemisphere 45.8
2828 Female, age 72, unknown 35.9
2019 Male, age 18, unknown 35.2
2411 Female, age 72, unknown 34.2
1827 Male, age 72, unknown 33.8
2219 Male, age 76, both hemispheres 30.2
1870 Female, age 42, unknown 30.0
1833 Male, age 53, unknown 29.5
2666 Male, age 74, left hemisphere 29.0
1830 Male, age 51, unknown 27.5
Dorsal raphe nucleus
nTPM: 33.7
2298 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 35.9
1828 Male, age 53, unknown 35.7
2750 Male, age 76, both hemispheres 29.2
2016 Female, age 72, unknown 28.9
Inferior colliculus
nTPM: 30.7
2097 Female, age 72, unknown 35.4
1848 Female, age 42, unknown 29.9
1890 Male, age 53, unknown 29.0
2849 Male, age 72, unknown 28.3
Median raphe nucleus
nTPM: 31.1
2220 Male, age 76, midline 31.1
Periaquaductal grey, anterior
nTPM: 35.1
1795 Male, age 51, unknown 36.0
1947 Male, age 18, unknown 35.1
2502 Female, age 75, unknown 34.1
Periaquaductal grey, dorsal
nTPM: 27.1
1840 Male, age 53, unknown 29.6
1831 Male, age 72, unknown 27.0
2464 Female, age 72, unknown 26.0
2850 Male, age 76, both hemispheres 26.0
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 35.2
2053 Male, age 18, unknown 28.5
2140 Male, age 76, both hemispheres 25.6
Pretectal area
nTPM: 33.3
2007 Male, age 72, unknown 42.8
1817 Female, age 42, unknown 40.3
1816 Male, age 51, unknown 38.7
1944 Female, age 72, unknown 37.3
2667 Female, age 75, unknown 35.0
1815 Male, age 53, unknown 32.7
2273 Male, age 74, both hemispheres 32.3
2224 Female, age 72, unknown 31.8
2825 Male, age 18, unknown 28.4
2316 Male, age 76, right hemisphere 24.9
2407 Male, age 75, both hemispheres 22.1
Red nucleus
nTPM: 31.5
2725 Female, age 75, unknown 37.3
1821 Female, age 72, unknown 35.1
2503 Female, age 72, unknown 35.1
2785 Male, age 18, unknown 33.3
2769 Male, age 72, unknown 31.6
1954 Female, age 42, unknown 31.2
2584 Male, age 75, left hemisphere 30.4
2227 Male, age 72, unknown 30.0
1865 Male, age 51, unknown 29.9
1904 Male, age 53, unknown 29.7
2823 Male, age 76, right hemisphere 29.0
2588 Male, age 74, left hemisphere 25.2
Substantia nigra
nTPM: 34.3
1916 Female, age 42, unknown 49.1
1851 Male, age 51, unknown 39.4
1941 Male, age 53, unknown 37.4
1889 Female, age 72, unknown 35.7
2665 Male, age 74, both hemispheres 33.8
2699 Male, age 18, unknown 33.2
2583 Male, age 75, right hemisphere 31.6
2590 Female, age 75, unknown 28.1
2241 Male, age 72, unknown 28.0
2409 Female, age 72, unknown 26.8
Superior colliculus
nTPM: 30.4
2087 Female, age 72, unknown 33.6
1796 Male, age 53, unknown 33.4
2664 Male, age 75, both hemispheres 33.0
2261 Male, age 18, unknown 32.2
2587 Male, age 74, left hemisphere 30.5
2668 Female, age 75, unknown 29.4
1839 Male, age 51, unknown 28.9
1995 Male, age 72, unknown 28.2
1913 Female, age 42, unknown 27.6
1895 Male, age 76, right hemisphere 27.2
Ventral tegmental area
nTPM: 33.4
2410 Female, age 72, unknown 38.0
1915 Female, age 42, unknown 37.9
2218 Male, age 76, both hemispheres 36.3
1942 Male, age 51, unknown 30.6
2021 Male, age 53, unknown 28.8
2223 Female, age 72, unknown 28.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 139

Max nTPM: 41.1
Min nTPM: 8.9
Std nTPM: 5.2
Median nTPM: 23.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 33.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 32.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 32.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 32.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.9
Samples: 4

Max nTPM: 30.3
Min nTPM: 20.4
Sample A Female 30.3
Sample B Female 20.4
Sample C Male 24.3
Sample D Male 24.5
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 34.9
Min nTPM: 23.7
Sample A Female 34.9
Sample B Female 23.7
Sample C Male 28.4
Sample D Male 26.3
Periaqueductal gray
nTPM: 24.3
Samples: 3

Max nTPM: 26.7
Min nTPM: 22.3
Sample B Female 24.0
Sample C Male 26.7
Sample D Male 22.3
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 36.8
Min nTPM: 23.0
Sample A Female 36.8
Sample B Female 23.0
Sample C Male 29.9
Sample D Male 29.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 39.0
Min nTPM: 15.8
Sample A Male 39.0
Sample B Male 32.5
Sample C Female 15.8
Sample D Female 32.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68191534 Antisense, RP_041129_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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