MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:5.1 nTPM
GTEx:12.9 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:13.1 nTPM
Mouse:27.4 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.1
2019 Male, age 18, unknown 7.0
2219 Male, age 76, both hemispheres 6.6
1833 Male, age 53, unknown 5.9
1830 Male, age 51, unknown 5.5
2411 Female, age 72, unknown 5.0
1827 Male, age 72, unknown 4.4
2586 Male, age 75, left hemisphere 4.4
2666 Male, age 74, left hemisphere 4.4
2828 Female, age 72, unknown 4.1
1870 Female, age 42, unknown 3.8
Dorsal raphe nucleus
nTPM: 4.5
2047 Male, age 72, unknown 4.8
2016 Female, age 72, unknown 4.6
2298 Female, age 72, unknown 4.4
1828 Male, age 53, unknown 4.3
2750 Male, age 76, both hemispheres 4.3
Inferior colliculus
nTPM: 4.6
2097 Female, age 72, unknown 4.9
1848 Female, age 42, unknown 4.6
1890 Male, age 53, unknown 4.6
2849 Male, age 72, unknown 4.2
Median raphe nucleus
nTPM: 4.5
2220 Male, age 76, midline 4.5
Periaquaductal grey, anterior
nTPM: 4.6
2502 Female, age 75, unknown 5.1
1795 Male, age 51, unknown 4.4
1947 Male, age 18, unknown 4.3
Periaquaductal grey, dorsal
nTPM: 4.2
2464 Female, age 72, unknown 4.9
1831 Male, age 72, unknown 4.5
2850 Male, age 76, both hemispheres 3.8
1840 Male, age 53, unknown 3.7
Periaquaductal grey, lateral
nTPM: 4.2
2140 Male, age 76, both hemispheres 4.8
2272 Male, age 74, both hemispheres 4.0
2053 Male, age 18, unknown 3.9
Pretectal area
nTPM: 4.4
2407 Male, age 75, both hemispheres 5.5
2273 Male, age 74, both hemispheres 4.7
2316 Male, age 76, right hemisphere 4.5
2667 Female, age 75, unknown 4.5
1817 Female, age 42, unknown 4.4
1815 Male, age 53, unknown 4.3
1944 Female, age 72, unknown 4.3
1816 Male, age 51, unknown 4.2
2007 Male, age 72, unknown 4.2
2825 Male, age 18, unknown 4.1
2224 Female, age 72, unknown 4.0
Red nucleus
nTPM: 4.9
2584 Male, age 75, left hemisphere 5.5
2823 Male, age 76, right hemisphere 5.5
2227 Male, age 72, unknown 5.4
2503 Female, age 72, unknown 5.2
1904 Male, age 53, unknown 5.1
2588 Male, age 74, left hemisphere 4.9
2785 Male, age 18, unknown 4.9
1821 Female, age 72, unknown 4.6
1954 Female, age 42, unknown 4.6
1865 Male, age 51, unknown 4.3
2769 Male, age 72, unknown 4.2
2725 Female, age 75, unknown 4.0
Substantia nigra
nTPM: 4.9
2409 Female, age 72, unknown 8.1
2241 Male, age 72, unknown 5.5
2590 Female, age 75, unknown 5.1
2665 Male, age 74, both hemispheres 4.9
1851 Male, age 51, unknown 4.5
1889 Female, age 72, unknown 4.4
2583 Male, age 75, right hemisphere 4.4
2699 Male, age 18, unknown 4.3
1941 Male, age 53, unknown 4.2
1916 Female, age 42, unknown 4.0
Superior colliculus
nTPM: 4.7
1839 Male, age 51, unknown 5.9
1913 Female, age 42, unknown 5.1
1995 Male, age 72, unknown 4.8
2668 Female, age 75, unknown 4.8
2261 Male, age 18, unknown 4.6
1895 Male, age 76, right hemisphere 4.5
1796 Male, age 53, unknown 4.4
2087 Female, age 72, unknown 4.3
2664 Male, age 75, both hemispheres 4.3
2587 Male, age 74, left hemisphere 4.2
Ventral tegmental area
nTPM: 4.6
2021 Male, age 53, unknown 5.5
2223 Female, age 72, unknown 5.0
2410 Female, age 72, unknown 4.8
1942 Male, age 51, unknown 4.3
2218 Male, age 76, both hemispheres 4.3
1915 Female, age 42, unknown 3.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.9
Samples: 139

Max nTPM: 23.9
Min nTPM: 4.7
Std nTPM: 3.8
Median nTPM: 12.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 23.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 21.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 21.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 20.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 20.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 20.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 19.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 19.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.5
FF:10158-103A5 76 years, female 20.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.1
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.7
Sample A Female 14.1
Sample B Female 12.2
Sample C Male 14.2
Sample D Male 11.7
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 10.6
Sample C Male 13.6
Sample D Male 13.0
Periaqueductal gray
nTPM: 11.1
Samples: 3

Max nTPM: 11.7
Min nTPM: 10.6
Sample B Female 11.0
Sample C Male 11.7
Sample D Male 10.6
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 15.2
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 15.2
Sample C Male 12.7
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 28.6
Min nTPM: 26.0
Sample A Male 28.6
Sample B Male 27.8
Sample C Female 26.0
Sample D Female 27.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
532607 Antisense, RP_040810_02_E05, Mouse strain C57BL/6J (56 days, male) 3.6

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