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MSH5
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  • MSH5
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

MSH5
Synonyms G7
Gene descriptioni

Full gene name according to HGNC.

MutS homolog 5
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband p21.33
Chromosome location (bp) 31739677 - 31762676
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000204410 (version 109)
Entrez gene 4439
HGNC HGNC:7328
UniProt O43196 (UniProt - Evidence at protein level)
neXtProt NX_O43196
GeneCards MSH5
Antibodypedia MSH5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Involved in DNA mismatch repair and meiotic recombination processes. Facilitates crossovers between homologs during meiosis (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA damage, DNA repair, Meiosis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the mutS family of proteins that are involved in DNA mismatch repair and meiotic recombination. This protein is similar to a Saccharomyces cerevisiae protein that participates in segregation fidelity and crossing-over events during meiosis. This protein plays a role in promoting ionizing radiation-induced apoptosis. This protein forms hetero-oligomers with another member of this family, mutS homolog 4. Polymorphisms in this gene have been linked to various human diseases, including IgA deficiency, common variable immunodeficiency, and premature ovarian failure. Alternative splicing results multiple transcript variants. Read-through transcription also exists between this gene and the downstream chromosome 6 open reading frame 26 (C6orf26) gene. [provided by RefSeq, Feb 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
MSH5-201
ENSP00000364855
ENST00000375703
O43196
[Direct mapping] MutS protein homolog 5
Show all
A0A024RCV6
[Target identity:100%; Query identity:100%] MutS homolog 5 (E. coli), isoform CRA_f
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0006281 [DNA repair]
GO:0006298 [mismatch repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0030983 [mismatched DNA binding]
GO:0051026 [chiasma assembly]
GO:0051321 [meiotic cell cycle]
GO:0140664 [ATP-dependent DNA damage sensor activity]
Show all
835 aa
93 kDa
No 0
MSH5-202
ENSP00000364892
ENST00000375740
O43196
[Direct mapping] MutS protein homolog 5
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0006281 [DNA repair]
GO:0006298 [mismatch repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0030983 [mismatched DNA binding]
GO:0051026 [chiasma assembly]
GO:0051321 [meiotic cell cycle]
GO:0140664 [ATP-dependent DNA damage sensor activity]
Show all
822 aa
91.9 kDa
No 0
MSH5-203
ENSP00000364903
ENST00000375750
O43196
[Direct mapping] MutS protein homolog 5
Show all
A0A024RCM1
[Target identity:100%; Query identity:100%] MSH5; MutS homolog 5 (E. coli), isoform CRA_e
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0006281 [DNA repair]
GO:0006298 [mismatch repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0030983 [mismatched DNA binding]
GO:0051026 [chiasma assembly]
GO:0051321 [meiotic cell cycle]
GO:0140664 [ATP-dependent DNA damage sensor activity]
Show all
834 aa
92.9 kDa
No 0
MSH5-204
ENSP00000364908
ENST00000375755
O43196
[Direct mapping] MutS protein homolog 5
Show all
A0A024RCM1
[Target identity:100%; Query identity:100%] MSH5; MutS homolog 5 (E. coli), isoform CRA_e
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0006281 [DNA repair]
GO:0006298 [mismatch repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0030983 [mismatched DNA binding]
GO:0051026 [chiasma assembly]
GO:0051321 [meiotic cell cycle]
GO:0140664 [ATP-dependent DNA damage sensor activity]
Show all
834 aa
92.9 kDa
No 0
MSH5-207
ENSP00000402842
ENST00000425703
Q5SSR2
[Direct mapping] MutS protein homolog 5
Show all
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
194 aa
21.5 kDa
No 0
MSH5-208
ENSP00000406849
ENST00000429846
A2ABF1
[Direct mapping] MutS protein homolog 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0005524 [ATP binding]
GO:0006298 [mismatch repair]
GO:0030983 [mismatched DNA binding]
GO:0140664 [ATP-dependent DNA damage sensor activity]
Show all
156 aa
16.9 kDa
No 0
MSH5-209
ENSP00000394971
ENST00000450148
A2ABE9
[Direct mapping] MutS protein homolog 5
Show all
   THUMBUP predicted membrane proteins
   SignalP predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
GO:0005524 [ATP binding]
GO:0006298 [mismatch repair]
GO:0030983 [mismatched DNA binding]
GO:0140664 [ATP-dependent DNA damage sensor activity]
Show all
333 aa
38.1 kDa
No 0
MSH5-221
ENSP00000498591
ENST00000652715
A0A494C0L0
[Direct mapping] MutS protein homolog 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Reproductive system diseases
   Reproductive system diseases
Show all
131 aa
14.5 kDa
No 0

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