We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
216.4
nTPM
HPA Brain:
63.1
nTPM
GTEx:
216.4
nTPM
FANTOM5:
283.5
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
63.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 15.5
2666
Male, age 74, left hemisphere
24.4
2019
Male, age 18, unknown
19.6
2828
Female, age 72, unknown
19.3
1830
Male, age 51, unknown
17.5
1870
Female, age 42, unknown
16.0
2411
Female, age 72, unknown
15.5
2586
Male, age 75, left hemisphere
14.4
1827
Male, age 72, unknown
11.1
2219
Male, age 76, both hemispheres
9.4
1833
Male, age 53, unknown
7.8
Dorsal raphe nucleus nTPM: 18.0
2016
Female, age 72, unknown
27.6
2298
Female, age 72, unknown
19.7
2750
Male, age 76, both hemispheres
19.1
2047
Male, age 72, unknown
14.7
1828
Male, age 53, unknown
9.2
Inferior colliculus nTPM: 14.6
1848
Female, age 42, unknown
19.1
2097
Female, age 72, unknown
15.5
2849
Male, age 72, unknown
12.6
1890
Male, age 53, unknown
11.3
Median raphe nucleus nTPM: 20.8
2220
Male, age 76, midline
20.8
Periaquaductal grey, anterior nTPM: 18.1
1795
Male, age 51, unknown
20.2
2502
Female, age 75, unknown
19.0
1947
Male, age 18, unknown
15.1
Periaquaductal grey, dorsal nTPM: 19.9
2850
Male, age 76, both hemispheres
34.6
1831
Male, age 72, unknown
21.7
2464
Female, age 72, unknown
15.5
1840
Male, age 53, unknown
7.8
Periaquaductal grey, lateral nTPM: 23.4
2140
Male, age 76, both hemispheres
36.9
2053
Male, age 18, unknown
18.3
2272
Male, age 74, both hemispheres
15.1
Pretectal area nTPM: 15.0
2316
Male, age 76, right hemisphere
22.5
2273
Male, age 74, both hemispheres
18.3
1817
Female, age 42, unknown
16.0
1944
Female, age 72, unknown
15.6
2224
Female, age 72, unknown
15.5
2407
Male, age 75, both hemispheres
14.4
2667
Female, age 75, unknown
14.2
2825
Male, age 18, unknown
13.9
2007
Male, age 72, unknown
13.2
1816
Male, age 51, unknown
11.7
1815
Male, age 53, unknown
9.3
Red nucleus nTPM: 18.1
2588
Male, age 74, left hemisphere
24.8
1821
Female, age 72, unknown
23.2
1865
Male, age 51, unknown
20.8
2769
Male, age 72, unknown
20.1
2227
Male, age 72, unknown
19.0
2785
Male, age 18, unknown
18.7
2725
Female, age 75, unknown
18.1
2823
Male, age 76, right hemisphere
16.4
1954
Female, age 42, unknown
16.0
2503
Female, age 72, unknown
15.5
2584
Male, age 75, left hemisphere
14.4
1904
Male, age 53, unknown
10.0
Substantia nigra nTPM: 18.0
2409
Female, age 72, unknown
29.5
2699
Male, age 18, unknown
24.2
1851
Male, age 51, unknown
23.2
2590
Female, age 75, unknown
18.0
2241
Male, age 72, unknown
16.2
1916
Female, age 42, unknown
16.0
1889
Female, age 72, unknown
15.8
2665
Male, age 74, both hemispheres
15.1
2583
Male, age 75, right hemisphere
14.4
1941
Male, age 53, unknown
7.8
Superior colliculus nTPM: 22.8
1796
Male, age 53, unknown
86.8
1995
Male, age 72, unknown
24.4
2668
Female, age 75, unknown
16.6
1913
Female, age 42, unknown
16.0
1839
Male, age 51, unknown
15.4
2587
Male, age 74, left hemisphere
15.1
2664
Male, age 75, both hemispheres
14.4
2087
Female, age 72, unknown
13.9
2261
Male, age 18, unknown
13.8
1895
Male, age 76, right hemisphere
11.2
Ventral tegmental area nTPM: 63.1
2021
Male, age 53, unknown
286.8
2218
Male, age 76, both hemispheres
23.2
1942
Male, age 51, unknown
20.3
2223
Female, age 72, unknown
16.6
1915
Female, age 42, unknown
16.0
2410
Female, age 72, unknown
15.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
216.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 216.4
Samples: 139
Max nTPM: 604.7
Min nTPM: 53.4
Std nTPM: 85.9
Median nTPM: 197.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
604.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
586.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
475.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
413.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
410.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
395.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
393.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
372.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
370.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
360.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
339.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
332.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
330.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
330.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
324.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
322.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
315.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
295.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
290.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
287.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
285.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
282.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
281.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
275.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
274.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
272.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
270.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
269.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
267.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
267.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
263.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
262.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
259.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
257.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
250.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
250.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
246.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
245.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
237.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
237.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
235.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
234.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
233.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
230.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
229.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
227.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
225.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
225.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
219.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
219.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
216.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
216.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
216.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
213.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
213.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
212.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
211.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
209.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
208.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
208.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
208.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
207.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
206.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
204.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
200.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
199.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
199.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
199.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
198.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
197.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
197.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
196.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
194.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
194.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
193.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
193.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
192.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
191.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
189.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
187.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
187.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
187.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
186.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
184.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
183.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
183.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
183.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
183.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
182.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
182.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
181.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
181.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
180.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
180.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
180.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
177.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
176.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
171.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
170.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
169.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
167.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
164.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
164.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
163.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
162.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
161.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
161.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
159.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
158.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
158.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
158.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
156.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
155.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
155.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
155.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
151.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
144.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
141.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
140.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
139.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
136.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
135.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
129.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
126.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
126.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
126.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
122.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
122.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
121.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
118.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
116.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
115.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
114.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
110.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
110.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
108.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
104.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
84.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
53.4
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.