MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA Brain:0.8 nTPM
GTEx:48.3 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:121.1 nTPM
Mouse:103.3 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 0.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.7
2666 Male, age 74, left hemisphere 1.2
2828 Female, age 72, unknown 1.0
1827 Male, age 72, unknown 0.7
2411 Female, age 72, unknown 0.7
2586 Male, age 75, left hemisphere 0.7
1833 Male, age 53, unknown 0.6
1870 Female, age 42, unknown 0.6
2019 Male, age 18, unknown 0.6
2219 Male, age 76, both hemispheres 0.6
1830 Male, age 51, unknown 0.4
Dorsal raphe nucleus
nTPM: 0.6
2047 Male, age 72, unknown 0.7
2298 Female, age 72, unknown 0.7
1828 Male, age 53, unknown 0.6
2016 Female, age 72, unknown 0.6
2750 Male, age 76, both hemispheres 0.6
Inferior colliculus
nTPM: 0.8
1890 Male, age 53, unknown 1.2
2097 Female, age 72, unknown 0.7
2849 Male, age 72, unknown 0.7
1848 Female, age 42, unknown 0.6
Median raphe nucleus
nTPM: 0.6
2220 Male, age 76, midline 0.6
Periaquaductal grey, anterior
nTPM: 0.6
1947 Male, age 18, unknown 0.6
2502 Female, age 75, unknown 0.6
1795 Male, age 51, unknown 0.4
Periaquaductal grey, dorsal
nTPM: 0.6
1831 Male, age 72, unknown 0.7
2464 Female, age 72, unknown 0.7
1840 Male, age 53, unknown 0.6
2850 Male, age 76, both hemispheres 0.6
Periaquaductal grey, lateral
nTPM: 0.5
2053 Male, age 18, unknown 0.6
2140 Male, age 76, both hemispheres 0.6
2272 Male, age 74, both hemispheres 0.3
Pretectal area
nTPM: 0.7
1816 Male, age 51, unknown 1.5
2007 Male, age 72, unknown 0.7
2224 Female, age 72, unknown 0.7
2407 Male, age 75, both hemispheres 0.7
1815 Male, age 53, unknown 0.6
1817 Female, age 42, unknown 0.6
1944 Female, age 72, unknown 0.6
2316 Male, age 76, right hemisphere 0.6
2667 Female, age 75, unknown 0.6
2825 Male, age 18, unknown 0.6
2273 Male, age 74, both hemispheres 0.5
Red nucleus
nTPM: 0.6
2227 Male, age 72, unknown 0.7
2503 Female, age 72, unknown 0.7
2584 Male, age 75, left hemisphere 0.7
2588 Male, age 74, left hemisphere 0.7
2769 Male, age 72, unknown 0.7
1821 Female, age 72, unknown 0.6
1904 Male, age 53, unknown 0.6
1954 Female, age 42, unknown 0.6
2725 Female, age 75, unknown 0.6
2785 Male, age 18, unknown 0.6
2823 Male, age 76, right hemisphere 0.6
1865 Male, age 51, unknown 0.5
Substantia nigra
nTPM: 0.7
2665 Male, age 74, both hemispheres 0.9
1851 Male, age 51, unknown 0.8
2241 Male, age 72, unknown 0.7
2409 Female, age 72, unknown 0.7
2583 Male, age 75, right hemisphere 0.7
1889 Female, age 72, unknown 0.6
1916 Female, age 42, unknown 0.6
1941 Male, age 53, unknown 0.6
2590 Female, age 75, unknown 0.6
2699 Male, age 18, unknown 0.6
Superior colliculus
nTPM: 0.6
1995 Male, age 72, unknown 0.7
2664 Male, age 75, both hemispheres 0.7
1796 Male, age 53, unknown 0.6
1895 Male, age 76, right hemisphere 0.6
1913 Female, age 42, unknown 0.6
2087 Female, age 72, unknown 0.6
2261 Male, age 18, unknown 0.6
2668 Female, age 75, unknown 0.6
1839 Male, age 51, unknown 0.5
2587 Male, age 74, left hemisphere 0.5
Ventral tegmental area
nTPM: 0.6
2410 Female, age 72, unknown 0.7
1915 Female, age 42, unknown 0.6
1942 Male, age 51, unknown 0.6
2021 Male, age 53, unknown 0.6
2218 Male, age 76, both hemispheres 0.6
2223 Female, age 72, unknown 0.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.3
Samples: 139

Max nTPM: 79.1
Min nTPM: 34.4
Std nTPM: 7.4
Median nTPM: 48.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 79.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 73.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 62.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 62.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 62.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 62.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 62.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 60.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 60.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 59.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 58.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 121.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.9
Samples: 4

Max nTPM: 134.8
Min nTPM: 85.7
Sample A Female 134.8
Sample B Female 85.7
Sample C Male 120.5
Sample D Male 86.4
Midbrain
nTPM: 120.2
Samples: 4

Max nTPM: 143.4
Min nTPM: 100.4
Sample A Female 128.3
Sample B Female 100.4
Sample C Male 143.4
Sample D Male 108.7
Periaqueductal gray
nTPM: 86.7
Samples: 3

Max nTPM: 95.8
Min nTPM: 81.3
Sample B Female 81.3
Sample C Male 95.8
Sample D Male 83.1
Superior colliculi
nTPM: 121.1
Samples: 4

Max nTPM: 147.2
Min nTPM: 84.0
Sample A Female 129.7
Sample B Female 84.0
Sample C Male 147.2
Sample D Male 123.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 103.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.3
Samples: 4

Max nTPM: 108.3
Min nTPM: 98.2
Sample A Male 108.3
Sample B Male 102.0
Sample C Female 98.2
Sample D Female 104.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
532738 Antisense, RP_040825_01_H12, Mouse strain C57BL/6J (56 days, male) 1.7

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