MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.7 nTPM
HPA Brain:29.1 nTPM
GTEx:62.7 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:109.8 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
1870 Female, age 42, unknown 23.2
2219 Male, age 76, both hemispheres 22.8
1833 Male, age 53, unknown 21.9
1827 Male, age 72, unknown 21.4
1830 Male, age 51, unknown 21.2
2666 Male, age 74, left hemisphere 20.9
2828 Female, age 72, unknown 20.5
2411 Female, age 72, unknown 18.2
2019 Male, age 18, unknown 13.0
2586 Male, age 75, left hemisphere 11.4
Dorsal raphe nucleus
nTPM: 21.8
2298 Female, age 72, unknown 23.4
1828 Male, age 53, unknown 23.3
2750 Male, age 76, both hemispheres 21.9
2047 Male, age 72, unknown 21.1
2016 Female, age 72, unknown 19.2
Inferior colliculus
nTPM: 20.4
2849 Male, age 72, unknown 22.5
2097 Female, age 72, unknown 21.4
1848 Female, age 42, unknown 19.9
1890 Male, age 53, unknown 17.7
Median raphe nucleus
nTPM: 29.1
2220 Male, age 76, midline 29.1
Periaquaductal grey, anterior
nTPM: 18.7
1947 Male, age 18, unknown 20.2
2502 Female, age 75, unknown 18.4
1795 Male, age 51, unknown 17.4
Periaquaductal grey, dorsal
nTPM: 21.3
2850 Male, age 76, both hemispheres 25.2
1840 Male, age 53, unknown 22.2
1831 Male, age 72, unknown 19.5
2464 Female, age 72, unknown 18.2
Periaquaductal grey, lateral
nTPM: 19.5
2140 Male, age 76, both hemispheres 21.9
2053 Male, age 18, unknown 19.2
2272 Male, age 74, both hemispheres 17.5
Pretectal area
nTPM: 20.9
2667 Female, age 75, unknown 25.0
2825 Male, age 18, unknown 24.0
1944 Female, age 72, unknown 22.6
1816 Male, age 51, unknown 21.3
2224 Female, age 72, unknown 21.3
2273 Male, age 74, both hemispheres 21.0
2407 Male, age 75, both hemispheres 19.7
1817 Female, age 42, unknown 19.5
2007 Male, age 72, unknown 19.4
2316 Male, age 76, right hemisphere 19.2
1815 Male, age 53, unknown 16.9
Red nucleus
nTPM: 19.5
2503 Female, age 72, unknown 23.6
1954 Female, age 42, unknown 22.9
1865 Male, age 51, unknown 20.3
2725 Female, age 75, unknown 20.3
2823 Male, age 76, right hemisphere 20.2
1821 Female, age 72, unknown 20.1
2227 Male, age 72, unknown 19.2
2769 Male, age 72, unknown 18.5
1904 Male, age 53, unknown 18.4
2588 Male, age 74, left hemisphere 16.8
2584 Male, age 75, left hemisphere 16.6
2785 Male, age 18, unknown 16.4
Substantia nigra
nTPM: 26.7
1916 Female, age 42, unknown 40.8
2241 Male, age 72, unknown 33.5
2699 Male, age 18, unknown 33.4
2665 Male, age 74, both hemispheres 28.2
1941 Male, age 53, unknown 25.4
2409 Female, age 72, unknown 23.8
1851 Male, age 51, unknown 22.5
1889 Female, age 72, unknown 22.1
2583 Male, age 75, right hemisphere 20.7
2590 Female, age 75, unknown 16.3
Superior colliculus
nTPM: 18.6
1796 Male, age 53, unknown 24.4
2668 Female, age 75, unknown 23.4
2261 Male, age 18, unknown 19.6
1839 Male, age 51, unknown 18.6
1895 Male, age 76, right hemisphere 18.4
2587 Male, age 74, left hemisphere 18.0
1913 Female, age 42, unknown 17.1
2087 Female, age 72, unknown 16.7
2664 Male, age 75, both hemispheres 15.7
1995 Male, age 72, unknown 14.2
Ventral tegmental area
nTPM: 23.6
1915 Female, age 42, unknown 30.1
2218 Male, age 76, both hemispheres 25.3
1942 Male, age 51, unknown 23.6
2223 Female, age 72, unknown 22.8
2021 Male, age 53, unknown 20.2
2410 Female, age 72, unknown 19.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.7
Samples: 139

Max nTPM: 115.8
Min nTPM: 32.4
Std nTPM: 13.0
Median nTPM: 61.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 99.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 95.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 92.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 91.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 90.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 89.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 88.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 85.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 83.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 82.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.1
FF:10158-103A5 76 years, female 43.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.2
Samples: 4

Max nTPM: 57.0
Min nTPM: 50.7
Sample A Female 57.0
Sample B Female 50.7
Sample C Male 54.3
Sample D Male 50.9
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 67.0
Min nTPM: 48.2
Sample A Female 67.0
Sample B Female 56.0
Sample C Male 49.2
Sample D Male 48.2
Periaqueductal gray
nTPM: 52.1
Samples: 3

Max nTPM: 52.8
Min nTPM: 50.7
Sample B Female 50.7
Sample C Male 52.8
Sample D Male 52.8
Superior colliculi
nTPM: 52.6
Samples: 4

Max nTPM: 60.7
Min nTPM: 43.7
Sample A Female 50.4
Sample B Female 43.7
Sample C Male 60.7
Sample D Male 55.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.9
Samples: 4

Max nTPM: 116.0
Min nTPM: 105.4
Sample A Male 105.4
Sample B Male 112.1
Sample C Female 116.0
Sample D Female 105.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
68744618 Antisense, RP_050208_01_C05, Mouse strain C57BL/6J (56 days, male) 3.4

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