MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.4 nTPM
HPA Brain:29.9 nTPM
GTEx:32.4 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:39.4 nTPM
Mouse:76.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.6
1827 Male, age 72, unknown 31.1
2411 Female, age 72, unknown 29.5
1870 Female, age 42, unknown 27.8
2586 Male, age 75, left hemisphere 27.6
2219 Male, age 76, both hemispheres 27.4
2666 Male, age 74, left hemisphere 26.6
1830 Male, age 51, unknown 25.3
2019 Male, age 18, unknown 24.5
1833 Male, age 53, unknown 24.3
2828 Female, age 72, unknown 22.1
Dorsal raphe nucleus
nTPM: 27.5
2298 Female, age 72, unknown 30.4
2750 Male, age 76, both hemispheres 29.5
2047 Male, age 72, unknown 29.4
1828 Male, age 53, unknown 25.2
2016 Female, age 72, unknown 23.1
Inferior colliculus
nTPM: 25.5
2097 Female, age 72, unknown 28.1
1848 Female, age 42, unknown 24.9
2849 Male, age 72, unknown 24.9
1890 Male, age 53, unknown 24.0
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 28.2
1947 Male, age 18, unknown 32.5
1795 Male, age 51, unknown 28.0
2502 Female, age 75, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 24.2
1840 Male, age 53, unknown 28.4
1831 Male, age 72, unknown 23.5
2464 Female, age 72, unknown 23.4
2850 Male, age 76, both hemispheres 21.6
Periaquaductal grey, lateral
nTPM: 25.5
2272 Male, age 74, both hemispheres 27.0
2053 Male, age 18, unknown 26.5
2140 Male, age 76, both hemispheres 23.1
Pretectal area
nTPM: 28.5
1816 Male, age 51, unknown 31.6
2667 Female, age 75, unknown 30.4
2224 Female, age 72, unknown 30.2
1944 Female, age 72, unknown 30.0
2007 Male, age 72, unknown 29.2
2273 Male, age 74, both hemispheres 28.7
1815 Male, age 53, unknown 27.5
1817 Female, age 42, unknown 27.3
2407 Male, age 75, both hemispheres 26.9
2825 Male, age 18, unknown 26.5
2316 Male, age 76, right hemisphere 25.1
Red nucleus
nTPM: 24.6
2584 Male, age 75, left hemisphere 29.9
2725 Female, age 75, unknown 28.4
1821 Female, age 72, unknown 25.8
2823 Male, age 76, right hemisphere 25.1
2769 Male, age 72, unknown 25.0
2588 Male, age 74, left hemisphere 24.2
1865 Male, age 51, unknown 23.5
1954 Female, age 42, unknown 23.5
2227 Male, age 72, unknown 23.0
2785 Male, age 18, unknown 22.9
1904 Male, age 53, unknown 22.4
2503 Female, age 72, unknown 21.5
Substantia nigra
nTPM: 28.5
1916 Female, age 42, unknown 37.8
2241 Male, age 72, unknown 33.4
1941 Male, age 53, unknown 32.3
1851 Male, age 51, unknown 31.4
1889 Female, age 72, unknown 28.8
2583 Male, age 75, right hemisphere 27.0
2699 Male, age 18, unknown 26.5
2590 Female, age 75, unknown 25.0
2409 Female, age 72, unknown 22.6
2665 Male, age 74, both hemispheres 20.0
Superior colliculus
nTPM: 25.5
1895 Male, age 76, right hemisphere 33.6
1796 Male, age 53, unknown 28.5
2587 Male, age 74, left hemisphere 27.7
2261 Male, age 18, unknown 27.4
2668 Female, age 75, unknown 26.5
2087 Female, age 72, unknown 25.5
1839 Male, age 51, unknown 23.7
1913 Female, age 42, unknown 23.6
2664 Male, age 75, both hemispheres 21.2
1995 Male, age 72, unknown 17.7
Ventral tegmental area
nTPM: 28.3
1915 Female, age 42, unknown 31.7
2218 Male, age 76, both hemispheres 30.2
2410 Female, age 72, unknown 29.6
1942 Male, age 51, unknown 26.2
2223 Female, age 72, unknown 26.1
2021 Male, age 53, unknown 26.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.4
Samples: 139

Max nTPM: 83.4
Min nTPM: 18.3
Std nTPM: 9.4
Median nTPM: 30.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 83.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 63.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 55.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 55.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 53.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 52.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 50.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 49.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 47.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 46.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.7
Samples: 4

Max nTPM: 45.7
Min nTPM: 30.5
Sample A Female 45.7
Sample B Female 30.5
Sample C Male 39.4
Sample D Male 31.2
Midbrain
nTPM: 39.3
Samples: 4

Max nTPM: 42.2
Min nTPM: 35.5
Sample A Female 42.2
Sample B Female 35.5
Sample C Male 40.3
Sample D Male 39.2
Periaqueductal gray
nTPM: 31.1
Samples: 3

Max nTPM: 37.5
Min nTPM: 27.3
Sample B Female 28.4
Sample C Male 37.5
Sample D Male 27.3
Superior colliculi
nTPM: 39.4
Samples: 4

Max nTPM: 44.1
Min nTPM: 32.9
Sample A Female 44.1
Sample B Female 32.9
Sample C Male 43.1
Sample D Male 37.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.2
Samples: 4

Max nTPM: 77.9
Min nTPM: 74.6
Sample A Male 76.7
Sample B Male 74.6
Sample C Female 77.9
Sample D Female 75.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68077015 Antisense, RP_040929_01_C08, Mouse strain C57BL/6J (56 days, male) 0.6

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