MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.2 nTPM
HPA Brain:41.7 nTPM
GTEx:9.2 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:20.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2219 Male, age 76, both hemispheres 36.7
1827 Male, age 72, unknown 18.8
2411 Female, age 72, unknown 18.0
2666 Male, age 74, left hemisphere 17.8
2828 Female, age 72, unknown 15.0
1833 Male, age 53, unknown 14.0
2586 Male, age 75, left hemisphere 11.7
1870 Female, age 42, unknown 11.6
1830 Male, age 51, unknown 11.5
2019 Male, age 18, unknown 9.7
Dorsal raphe nucleus
nTPM: 15.1
1828 Male, age 53, unknown 20.2
2016 Female, age 72, unknown 16.0
2047 Male, age 72, unknown 14.4
2298 Female, age 72, unknown 13.7
2750 Male, age 76, both hemispheres 11.3
Inferior colliculus
nTPM: 20.5
2097 Female, age 72, unknown 24.1
1848 Female, age 42, unknown 23.0
1890 Male, age 53, unknown 18.9
2849 Male, age 72, unknown 16.2
Median raphe nucleus
nTPM: 15.7
2220 Male, age 76, midline 15.7
Periaquaductal grey, anterior
nTPM: 22.9
2502 Female, age 75, unknown 32.2
1947 Male, age 18, unknown 19.9
1795 Male, age 51, unknown 16.6
Periaquaductal grey, dorsal
nTPM: 15.9
1840 Male, age 53, unknown 21.4
2850 Male, age 76, both hemispheres 14.8
2464 Female, age 72, unknown 13.9
1831 Male, age 72, unknown 13.4
Periaquaductal grey, lateral
nTPM: 14.1
2053 Male, age 18, unknown 16.8
2140 Male, age 76, both hemispheres 16.4
2272 Male, age 74, both hemispheres 9.3
Pretectal area
nTPM: 19.6
1816 Male, age 51, unknown 34.6
1944 Female, age 72, unknown 30.2
1815 Male, age 53, unknown 23.8
1817 Female, age 42, unknown 22.7
2007 Male, age 72, unknown 20.9
2667 Female, age 75, unknown 17.2
2825 Male, age 18, unknown 15.2
2316 Male, age 76, right hemisphere 14.9
2224 Female, age 72, unknown 14.5
2407 Male, age 75, both hemispheres 11.8
2273 Male, age 74, both hemispheres 9.5
Red nucleus
nTPM: 9.8
2584 Male, age 75, left hemisphere 13.1
2785 Male, age 18, unknown 11.8
2227 Male, age 72, unknown 11.4
2769 Male, age 72, unknown 11.2
1821 Female, age 72, unknown 10.7
2503 Female, age 72, unknown 9.7
2725 Female, age 75, unknown 9.0
2823 Male, age 76, right hemisphere 8.9
2588 Male, age 74, left hemisphere 8.8
1865 Male, age 51, unknown 8.4
1954 Female, age 42, unknown 7.9
1904 Male, age 53, unknown 6.8
Substantia nigra
nTPM: 41.7
1916 Female, age 42, unknown 68.6
1941 Male, age 53, unknown 51.0
2665 Male, age 74, both hemispheres 47.1
1851 Male, age 51, unknown 46.8
2241 Male, age 72, unknown 44.4
2409 Female, age 72, unknown 44.4
2699 Male, age 18, unknown 44.4
2590 Female, age 75, unknown 27.4
1889 Female, age 72, unknown 27.0
2583 Male, age 75, right hemisphere 15.5
Superior colliculus
nTPM: 19.3
2087 Female, age 72, unknown 32.7
1895 Male, age 76, right hemisphere 27.3
2261 Male, age 18, unknown 22.5
2668 Female, age 75, unknown 20.4
1796 Male, age 53, unknown 20.2
1839 Male, age 51, unknown 15.7
2664 Male, age 75, both hemispheres 15.5
1913 Female, age 42, unknown 13.8
1995 Male, age 72, unknown 12.7
2587 Male, age 74, left hemisphere 11.8
Ventral tegmental area
nTPM: 31.1
2218 Male, age 76, both hemispheres 47.2
1915 Female, age 42, unknown 41.4
2410 Female, age 72, unknown 36.3
1942 Male, age 51, unknown 29.2
2223 Female, age 72, unknown 19.3
2021 Male, age 53, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.2
Samples: 139

Max nTPM: 46.4
Min nTPM: 0.2
Std nTPM: 9.1
Median nTPM: 5.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 38.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 34.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 28.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 26.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 25.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 25.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 25.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 7.4
Sample A Female 34.0
Sample B Female 16.0
Sample C Male 29.4
Sample D Male 7.4
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 27.6
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 26.1
Sample C Male 27.6
Sample D Male 25.5
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 23.9
Min nTPM: 13.0
Sample B Female 23.9
Sample C Male 23.2
Sample D Male 13.0
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 19.9
Min nTPM: 10.5
Sample A Female 19.8
Sample B Female 10.5
Sample C Male 16.2
Sample D Male 19.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 22.1
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 22.1
Sample C Female 21.7
Sample D Female 19.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70596234 Antisense, RP_050628_04_F04, Mouse strain C57BL/6J (56 days, male) 0.3
71493867 Antisense, RP_050913_02_H07, Mouse strain C57BL/6J (56 days, male) 0.0

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