MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.7 nTPM
HPA Brain:39.6 nTPM
GTEx:2.7 nTPM
FANTOM5:250.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.0
2586 Male, age 75, left hemisphere 49.4
2219 Male, age 76, both hemispheres 44.7
2411 Female, age 72, unknown 44.1
1830 Male, age 51, unknown 41.3
1827 Male, age 72, unknown 40.0
2666 Male, age 74, left hemisphere 38.9
2019 Male, age 18, unknown 37.2
1833 Male, age 53, unknown 36.7
2828 Female, age 72, unknown 32.3
1870 Female, age 42, unknown 25.9
Dorsal raphe nucleus
nTPM: 32.5
2750 Male, age 76, both hemispheres 42.5
2047 Male, age 72, unknown 33.7
2016 Female, age 72, unknown 29.8
2298 Female, age 72, unknown 28.6
1828 Male, age 53, unknown 27.9
Inferior colliculus
nTPM: 29.6
2849 Male, age 72, unknown 35.6
1890 Male, age 53, unknown 30.8
1848 Female, age 42, unknown 29.0
2097 Female, age 72, unknown 23.0
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Periaquaductal grey, anterior
nTPM: 39.6
1947 Male, age 18, unknown 40.1
2502 Female, age 75, unknown 39.5
1795 Male, age 51, unknown 39.1
Periaquaductal grey, dorsal
nTPM: 29.4
2464 Female, age 72, unknown 42.6
1840 Male, age 53, unknown 27.3
1831 Male, age 72, unknown 26.1
2850 Male, age 76, both hemispheres 21.7
Periaquaductal grey, lateral
nTPM: 31.9
2272 Male, age 74, both hemispheres 35.3
2053 Male, age 18, unknown 32.8
2140 Male, age 76, both hemispheres 27.7
Pretectal area
nTPM: 33.1
2407 Male, age 75, both hemispheres 46.0
2316 Male, age 76, right hemisphere 44.3
2007 Male, age 72, unknown 37.0
1815 Male, age 53, unknown 34.9
2224 Female, age 72, unknown 33.8
2825 Male, age 18, unknown 33.5
1816 Male, age 51, unknown 29.4
1944 Female, age 72, unknown 29.2
1817 Female, age 42, unknown 26.3
2273 Male, age 74, both hemispheres 26.0
2667 Female, age 75, unknown 24.1
Red nucleus
nTPM: 38.8
2584 Male, age 75, left hemisphere 45.4
2823 Male, age 76, right hemisphere 44.8
2725 Female, age 75, unknown 44.2
1865 Male, age 51, unknown 42.2
2503 Female, age 72, unknown 42.1
2785 Male, age 18, unknown 41.1
2588 Male, age 74, left hemisphere 39.2
2769 Male, age 72, unknown 37.4
1904 Male, age 53, unknown 37.2
2227 Male, age 72, unknown 37.1
1821 Female, age 72, unknown 28.0
1954 Female, age 42, unknown 26.7
Substantia nigra
nTPM: 37.2
2409 Female, age 72, unknown 44.2
2590 Female, age 75, unknown 43.2
1916 Female, age 42, unknown 41.7
1941 Male, age 53, unknown 41.7
1851 Male, age 51, unknown 38.0
2699 Male, age 18, unknown 34.4
2583 Male, age 75, right hemisphere 33.2
2665 Male, age 74, both hemispheres 32.9
1889 Female, age 72, unknown 31.9
2241 Male, age 72, unknown 30.6
Superior colliculus
nTPM: 37.2
2664 Male, age 75, both hemispheres 46.4
1895 Male, age 76, right hemisphere 42.3
1796 Male, age 53, unknown 40.2
1913 Female, age 42, unknown 36.9
2668 Female, age 75, unknown 36.8
1839 Male, age 51, unknown 36.2
2261 Male, age 18, unknown 35.3
1995 Male, age 72, unknown 33.8
2087 Female, age 72, unknown 33.2
2587 Male, age 74, left hemisphere 30.4
Ventral tegmental area
nTPM: 35.5
2410 Female, age 72, unknown 45.4
2218 Male, age 76, both hemispheres 40.7
1942 Male, age 51, unknown 32.8
2021 Male, age 53, unknown 32.7
1915 Female, age 42, unknown 31.5
2223 Female, age 72, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.7
Samples: 139

Max nTPM: 15.3
Min nTPM: 0.0
Std nTPM: 2.1
Median nTPM: 2.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 10.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 8.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 7.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 7.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 7.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 7.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 6.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 6.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 6.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 6.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 250.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 250.6
FF:10158-103A5 76 years, female 250.6

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