MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:956.4 nTPM
HPA Brain:382.3 nTPM
GTEx:956.4 nTPM
FANTOM5:0.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 382.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 199.7
2219 Male, age 76, both hemispheres 702.3
2828 Female, age 72, unknown 202.2
2666 Male, age 74, left hemisphere 177.5
1830 Male, age 51, unknown 169.4
2411 Female, age 72, unknown 156.7
1833 Male, age 53, unknown 155.6
2019 Male, age 18, unknown 132.3
1870 Female, age 42, unknown 112.6
2586 Male, age 75, left hemisphere 98.3
1827 Male, age 72, unknown 90.2
Dorsal raphe nucleus
nTPM: 190.7
2298 Female, age 72, unknown 557.1
1828 Male, age 53, unknown 132.9
2016 Female, age 72, unknown 111.6
2750 Male, age 76, both hemispheres 86.1
2047 Male, age 72, unknown 65.9
Inferior colliculus
nTPM: 111.4
1890 Male, age 53, unknown 148.5
1848 Female, age 42, unknown 121.9
2849 Male, age 72, unknown 98.9
2097 Female, age 72, unknown 76.3
Median raphe nucleus
nTPM: 129.7
2220 Male, age 76, midline 129.7
Periaquaductal grey, anterior
nTPM: 97.0
2502 Female, age 75, unknown 120.0
1795 Male, age 51, unknown 99.1
1947 Male, age 18, unknown 71.9
Periaquaductal grey, dorsal
nTPM: 120.0
1831 Male, age 72, unknown 222.0
2464 Female, age 72, unknown 115.7
2850 Male, age 76, both hemispheres 91.8
1840 Male, age 53, unknown 50.4
Periaquaductal grey, lateral
nTPM: 79.1
2272 Male, age 74, both hemispheres 112.8
2053 Male, age 18, unknown 73.0
2140 Male, age 76, both hemispheres 51.4
Pretectal area
nTPM: 106.4
1817 Female, age 42, unknown 159.2
2316 Male, age 76, right hemisphere 155.9
2825 Male, age 18, unknown 113.8
1815 Male, age 53, unknown 112.4
2007 Male, age 72, unknown 111.3
1816 Male, age 51, unknown 106.4
2667 Female, age 75, unknown 100.0
2273 Male, age 74, both hemispheres 95.2
2224 Female, age 72, unknown 78.4
1944 Female, age 72, unknown 78.1
2407 Male, age 75, both hemispheres 59.8
Red nucleus
nTPM: 166.1
1904 Male, age 53, unknown 271.9
1821 Female, age 72, unknown 241.0
2769 Male, age 72, unknown 206.6
2227 Male, age 72, unknown 200.1
2588 Male, age 74, left hemisphere 188.1
1865 Male, age 51, unknown 157.8
2503 Female, age 72, unknown 145.1
2725 Female, age 75, unknown 126.3
1954 Female, age 42, unknown 124.1
2584 Male, age 75, left hemisphere 121.2
2785 Male, age 18, unknown 109.5
2823 Male, age 76, right hemisphere 101.7
Substantia nigra
nTPM: 183.1
2665 Male, age 74, both hemispheres 344.2
2699 Male, age 18, unknown 340.7
1851 Male, age 51, unknown 237.0
1916 Female, age 42, unknown 161.6
2241 Male, age 72, unknown 156.5
2409 Female, age 72, unknown 147.1
1941 Male, age 53, unknown 126.2
1889 Female, age 72, unknown 115.7
2590 Female, age 75, unknown 113.5
2583 Male, age 75, right hemisphere 88.9
Superior colliculus
nTPM: 132.9
2587 Male, age 74, left hemisphere 247.1
2668 Female, age 75, unknown 181.5
1796 Male, age 53, unknown 141.2
1995 Male, age 72, unknown 139.2
2261 Male, age 18, unknown 129.5
1895 Male, age 76, right hemisphere 128.2
1839 Male, age 51, unknown 113.9
1913 Female, age 42, unknown 107.6
2087 Female, age 72, unknown 98.8
2664 Male, age 75, both hemispheres 41.9
Ventral tegmental area
nTPM: 382.3
2218 Male, age 76, both hemispheres 588.2
1915 Female, age 42, unknown 579.7
2021 Male, age 53, unknown 349.0
2223 Female, age 72, unknown 279.0
2410 Female, age 72, unknown 258.6
1942 Male, age 51, unknown 239.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 956.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 956.4
Samples: 139

Max nTPM: 17089.4
Min nTPM: 22.9
Std nTPM: 1902.5
Median nTPM: 413.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17089.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 8800.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7638.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 6373.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 5407.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 5026.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3505.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 3294.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 2998.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 2405.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2182.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

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