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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.4
nTPM
Monaco:
11.4
nTPM
Schmiedel:
43.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
28.4
HPA sample
nTPM
gdT-cell nTPM: 24.7
Samples: 6
Max nTPM: 65.5
Min nTPM: 1.0
P10809_1007
2.3
P10809_1022
32.6
P10809_1041
65.5
P10809_1060
12.4
P10809_1077
1.0
P10809_1098
34.2
MAIT T-cell nTPM: 21.7
Samples: 6
Max nTPM: 97.1
Min nTPM: 0.0
P10809_1006
0.0
P10809_1024
1.9
P10809_1043
97.1
P10809_1062
1.4
P10809_1083
4.3
P10809_1097
25.7
Memory CD4 T-cell nTPM: 28.4
Samples: 6
Max nTPM: 103.1
Min nTPM: 1.8
P10809_1014
4.5
P10809_1026
103.1
P10809_1045
1.8
P10809_1064
2.7
P10809_1086
11.3
P10809_1113
47.1
Memory CD8 T-cell nTPM: 18.3
Samples: 5
Max nTPM: 50.0
Min nTPM: 2.4
P10809_1012
9.3
P10809_1027
9.1
P10809_1046
20.5
P10809_1065
50.0
P10809_1111
2.4
Naive CD4 T-cell nTPM: 15.3
Samples: 6
Max nTPM: 28.4
Min nTPM: 5.2
P10809_1015
5.2
P10809_1030
11.9
P10809_1049
28.4
P10809_1068
7.3
P10809_1085
24.7
P10809_1112
14.0
Naive CD8 T-cell nTPM: 16.9
Samples: 6
Max nTPM: 31.9
Min nTPM: 2.4
P10809_1016
6.5
P10809_1031
9.1
P10809_1050
2.4
P10809_1069
31.1
P10809_1087
20.3
P10809_1110
31.9
T-reg nTPM: 23.8
Samples: 6
Max nTPM: 52.3
Min nTPM: 1.0
P10809_1018
26.9
P10809_1037
1.0
P10809_1056
23.3
P10809_1075
23.1
P10809_1094
52.3
P10809_1106
15.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
11.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 4.1
Samples: 4
Max nTPM: 11.0
Min nTPM: 1.0
RHH5202_R3573
1.6
RHH5230_R3602
11.0
RHH5259_R3631
1.0
RHH5288_R3660
2.7
Effector memory CD8 T-cell nTPM: 5.5
Samples: 4
Max nTPM: 11.9
Min nTPM: 1.5
RHH5203_R3574
1.5
RHH5231_R3603
5.2
RHH5260_R3632
3.4
RHH5289_R3661
11.9
MAIT T-cell nTPM: 9.1
Samples: 4
Max nTPM: 29.6
Min nTPM: 0.0
RHH5233_R3605
29.6
RHH5205_R3576
0.0
RHH5262_R3634
6.9
RHH5297_R3663
0.0
Memory CD4 T-cell TFH nTPM: 5.3
Samples: 4
Max nTPM: 12.7
Min nTPM: 0.7
RHH5300_R3666
2.9
RHH5236_R3608
5.0
RHH5265_R3637
12.7
RHH5208_R3579
0.7
Memory CD4 T-cell Th1 nTPM: 6.8
Samples: 4
Max nTPM: 13.7
Min nTPM: 1.7
RHH5210_R3581
13.7
RHH5302_R3668
4.3
RHH5238_R3610
7.3
RHH5267_R3639
1.7
Memory CD4 T-cell Th1/Th17 nTPM: 5.6
Samples: 4
Max nTPM: 17.3
Min nTPM: 0.0
RHH5303_R3669
0.0
RHH5211_R3582
2.7
RHH5239_R3611
2.4
RHH5268_R3640
17.3
Memory CD4 T-cell Th17 nTPM: 8.1
Samples: 4
Max nTPM: 20.9
Min nTPM: 2.4
RHH5304_R3670
20.9
RHH5212_R3583
6.3
RHH5240_R3612
2.7
RHH5269_R3641
2.4
Memory CD4 T-cell Th2 nTPM: 6.9
Samples: 4
Max nTPM: 18.2
Min nTPM: 0.5
RHH5305_R3671
0.7
RHH5213_R3584
0.5
RHH5241_R3613
18.2
RHH5270_R3642
8.0
Naive CD4 T-cell nTPM: 6.2
Samples: 4
Max nTPM: 13.1
Min nTPM: 2.4
RHH5306_R3672
5.9
RHH5214_R3585
13.1
RHH5242_R3614
2.4
RHH5271_R3643
3.5
Naive CD8 T-cell nTPM: 3.3
Samples: 4
Max nTPM: 6.3
Min nTPM: 1.0
RHH5201_R3572
6.3
RHH5229_R3601
2.3
RHH5258_R3630
1.0
RHH5287_R3659
3.4
Non-Vd2 gdTCR nTPM: 4.8
Samples: 4
Max nTPM: 7.8
Min nTPM: 2.4
RHH5235_R3607
2.4
RHH5264_R3636
2.7
RHH5207_R3578
7.8
RHH5299_R3665
6.3
T-reg nTPM: 11.4
Samples: 4
Max nTPM: 26.4
Min nTPM: 0.5
RHH5301_R3667
7.1
RHH5237_R3609
26.4
RHH5266_R3638
0.5
RHH5209_R3580
11.6
Terminal effector memory CD4 T-cell nTPM: 10.5
Samples: 2
Max nTPM: 19.1
Min nTPM: 1.9
RHH5243_R3615
19.1
RHH5272_R3644
1.9
Terminal effector memory CD8 T-cell nTPM: 5.3
Samples: 4
Max nTPM: 15.3
Min nTPM: 0.7
RHH5232_R3604
0.7
RHH5204_R3575
4.2
RHH5261_R3633
0.9
RHH5296_R3662
15.3
Vd2 gdTCR nTPM: 2.7
Samples: 4
Max nTPM: 4.6
Min nTPM: 0.7
RHH5234_R3606
1.5
RHH5206_R3577
4.6
RHH5263_R3635
3.8
RHH5298_R3664
0.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
