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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
98.1
nTPM
Monaco:
575.6
nTPM
Schmiedel:
32.7
TPM
T-CELLS - Annotated protein expression
Pending normal tissue analysis
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
98.1
HPA sample
nTPM
gdT-cell nTPM: 98.1
Samples: 6
Max nTPM: 351.8
Min nTPM: 3.0
P10809_1007
28.8
P10809_1022
16.0
P10809_1041
12.7
P10809_1060
176.3
P10809_1077
351.8
P10809_1098
3.0
MAIT T-cell nTPM: 30.2
Samples: 6
Max nTPM: 66.4
Min nTPM: 4.6
P10809_1006
66.4
P10809_1024
18.0
P10809_1043
4.7
P10809_1062
58.7
P10809_1083
28.7
P10809_1097
4.6
Memory CD4 T-cell nTPM: 4.4
Samples: 6
Max nTPM: 11.5
Min nTPM: 0.5
P10809_1014
5.0
P10809_1026
2.7
P10809_1045
1.1
P10809_1064
11.5
P10809_1086
5.7
P10809_1113
0.5
Memory CD8 T-cell nTPM: 26.8
Samples: 5
Max nTPM: 57.6
Min nTPM: 4.4
P10809_1012
30.0
P10809_1027
34.5
P10809_1046
7.5
P10809_1065
57.6
P10809_1111
4.4
Naive CD4 T-cell nTPM: 2.0
Samples: 6
Max nTPM: 3.7
Min nTPM: 0.3
P10809_1015
3.7
P10809_1030
1.6
P10809_1049
0.3
P10809_1068
2.9
P10809_1085
3.1
P10809_1112
0.3
Naive CD8 T-cell nTPM: 23.9
Samples: 6
Max nTPM: 68.8
Min nTPM: 1.6
P10809_1016
10.2
P10809_1031
35.2
P10809_1050
4.1
P10809_1069
23.4
P10809_1087
68.8
P10809_1110
1.6
T-reg nTPM: 1.4
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.3
P10809_1018
1.9
P10809_1037
2.2
P10809_1056
0.5
P10809_1075
0.8
P10809_1094
2.9
P10809_1106
0.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
575.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 64.3
Samples: 4
Max nTPM: 87.0
Min nTPM: 35.0
RHH5202_R3573
73.5
RHH5230_R3602
87.0
RHH5259_R3631
35.0
RHH5288_R3660
61.6
Effector memory CD8 T-cell nTPM: 203.6
Samples: 4
Max nTPM: 365.9
Min nTPM: 79.3
RHH5203_R3574
365.9
RHH5231_R3603
170.4
RHH5260_R3632
79.3
RHH5289_R3661
198.6
MAIT T-cell nTPM: 180.9
Samples: 4
Max nTPM: 203.8
Min nTPM: 156.6
RHH5233_R3605
156.6
RHH5205_R3576
203.8
RHH5262_R3634
202.1
RHH5297_R3663
161.2
Memory CD4 T-cell TFH nTPM: 11.3
Samples: 4
Max nTPM: 21.0
Min nTPM: 3.5
RHH5300_R3666
7.2
RHH5236_R3608
3.5
RHH5265_R3637
13.5
RHH5208_R3579
21.0
Memory CD4 T-cell Th1 nTPM: 16.4
Samples: 4
Max nTPM: 26.6
Min nTPM: 9.2
RHH5210_R3581
14.0
RHH5302_R3668
9.2
RHH5238_R3610
15.9
RHH5267_R3639
26.6
Memory CD4 T-cell Th1/Th17 nTPM: 22.4
Samples: 4
Max nTPM: 30.5
Min nTPM: 12.9
RHH5303_R3669
29.4
RHH5211_R3582
30.5
RHH5239_R3611
16.8
RHH5268_R3640
12.9
Memory CD4 T-cell Th17 nTPM: 25.8
Samples: 4
Max nTPM: 40.5
Min nTPM: 18.6
RHH5304_R3670
40.5
RHH5212_R3583
18.6
RHH5240_R3612
23.4
RHH5269_R3641
20.8
Memory CD4 T-cell Th2 nTPM: 17.5
Samples: 4
Max nTPM: 19.9
Min nTPM: 15.4
RHH5305_R3671
15.4
RHH5213_R3584
16.6
RHH5241_R3613
19.9
RHH5270_R3642
17.9
Naive CD4 T-cell nTPM: 19.8
Samples: 4
Max nTPM: 31.9
Min nTPM: 12.0
RHH5306_R3672
16.1
RHH5214_R3585
19.3
RHH5242_R3614
31.9
RHH5271_R3643
12.0
Naive CD8 T-cell nTPM: 17.0
Samples: 4
Max nTPM: 25.0
Min nTPM: 4.2
RHH5201_R3572
22.7
RHH5229_R3601
4.2
RHH5258_R3630
25.0
RHH5287_R3659
15.9
Non-Vd2 gdTCR nTPM: 575.6
Samples: 4
Max nTPM: 1320.5
Min nTPM: 153.8
RHH5235_R3607
153.8
RHH5264_R3636
410.5
RHH5207_R3578
1320.5
RHH5299_R3665
417.7
T-reg nTPM: 17.2
Samples: 4
Max nTPM: 24.4
Min nTPM: 8.2
RHH5301_R3667
8.2
RHH5237_R3609
16.0
RHH5266_R3638
20.0
RHH5209_R3580
24.4
Terminal effector memory CD4 T-cell nTPM: 26.2
Samples: 2
Max nTPM: 32.8
Min nTPM: 19.5
RHH5243_R3615
32.8
RHH5272_R3644
19.5
Terminal effector memory CD8 T-cell nTPM: 173.1
Samples: 4
Max nTPM: 354.4
Min nTPM: 81.3
RHH5232_R3604
81.3
RHH5204_R3575
354.4
RHH5261_R3633
86.2
RHH5296_R3662
170.5
Vd2 gdTCR nTPM: 130.4
Samples: 4
Max nTPM: 276.9
Min nTPM: 67.3
RHH5234_R3606
100.7
RHH5206_R3577
276.9
RHH5263_R3635
67.3
RHH5298_R3664
76.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
