MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.6 nTPM
HPA Brain:27.8 nTPM
GTEx:30.6 nTPM
FANTOM5:2.5 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:25.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.4
1870 Female, age 42, unknown 7.0
1833 Male, age 53, unknown 5.5
2666 Male, age 74, left hemisphere 5.5
1830 Male, age 51, unknown 4.8
2019 Male, age 18, unknown 4.5
2828 Female, age 72, unknown 4.4
1827 Male, age 72, unknown 3.7
2411 Female, age 72, unknown 3.4
2586 Male, age 75, left hemisphere 2.8
2219 Male, age 76, both hemispheres 2.7
Dorsal raphe nucleus
nTPM: 17.5
2298 Female, age 72, unknown 40.0
2016 Female, age 72, unknown 24.8
1828 Male, age 53, unknown 12.1
2047 Male, age 72, unknown 6.7
2750 Male, age 76, both hemispheres 3.6
Inferior colliculus
nTPM: 5.5
1890 Male, age 53, unknown 9.8
2849 Male, age 72, unknown 5.0
1848 Female, age 42, unknown 3.6
2097 Female, age 72, unknown 3.6
Median raphe nucleus
nTPM: 3.1
2220 Male, age 76, midline 3.1
Periaquaductal grey, anterior
nTPM: 15.8
1795 Male, age 51, unknown 32.1
1947 Male, age 18, unknown 9.1
2502 Female, age 75, unknown 6.0
Periaquaductal grey, dorsal
nTPM: 23.7
2850 Male, age 76, both hemispheres 60.0
1840 Male, age 53, unknown 17.0
1831 Male, age 72, unknown 10.4
2464 Female, age 72, unknown 7.3
Periaquaductal grey, lateral
nTPM: 27.8
2272 Male, age 74, both hemispheres 44.5
2140 Male, age 76, both hemispheres 31.5
2053 Male, age 18, unknown 7.5
Pretectal area
nTPM: 6.9
2273 Male, age 74, both hemispheres 28.5
2224 Female, age 72, unknown 10.7
2825 Male, age 18, unknown 7.6
2667 Female, age 75, unknown 5.8
1817 Female, age 42, unknown 5.1
2007 Male, age 72, unknown 3.7
1815 Male, age 53, unknown 3.4
2316 Male, age 76, right hemisphere 3.0
1816 Male, age 51, unknown 2.9
1944 Female, age 72, unknown 2.7
2407 Male, age 75, both hemispheres 2.5
Red nucleus
nTPM: 5.8
2227 Male, age 72, unknown 8.5
2785 Male, age 18, unknown 8.5
2769 Male, age 72, unknown 8.4
2725 Female, age 75, unknown 5.9
1954 Female, age 42, unknown 5.8
2503 Female, age 72, unknown 5.6
2584 Male, age 75, left hemisphere 5.4
1904 Male, age 53, unknown 5.1
1865 Male, age 51, unknown 4.4
2588 Male, age 74, left hemisphere 4.2
2823 Male, age 76, right hemisphere 3.9
1821 Female, age 72, unknown 3.6
Substantia nigra
nTPM: 4.4
2699 Male, age 18, unknown 9.0
2665 Male, age 74, both hemispheres 6.9
2590 Female, age 75, unknown 5.6
2409 Female, age 72, unknown 4.3
1851 Male, age 51, unknown 4.0
1916 Female, age 42, unknown 3.1
2241 Male, age 72, unknown 3.1
2583 Male, age 75, right hemisphere 3.0
1889 Female, age 72, unknown 2.3
1941 Male, age 53, unknown 2.2
Superior colliculus
nTPM: 6.2
1995 Male, age 72, unknown 15.4
2587 Male, age 74, left hemisphere 10.5
2668 Female, age 75, unknown 7.2
2087 Female, age 72, unknown 4.8
1895 Male, age 76, right hemisphere 4.7
2261 Male, age 18, unknown 4.7
1913 Female, age 42, unknown 4.3
1839 Male, age 51, unknown 4.0
1796 Male, age 53, unknown 3.9
2664 Male, age 75, both hemispheres 2.6
Ventral tegmental area
nTPM: 5.7
2021 Male, age 53, unknown 8.9
1915 Female, age 42, unknown 6.7
1942 Male, age 51, unknown 5.0
2410 Female, age 72, unknown 4.7
2218 Male, age 76, both hemispheres 4.6
2223 Female, age 72, unknown 4.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.6
Samples: 139

Max nTPM: 269.3
Min nTPM: 3.5
Std nTPM: 27.8
Median nTPM: 23.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 269.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 111.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 87.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 82.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 78.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 70.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 69.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 67.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 67.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 63.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.4
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.2
Sample A Female 9.9
Sample B Female 12.9
Sample C Male 8.2
Sample D Male 10.5
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 12.0
Min nTPM: 7.9
Sample A Female 12.0
Sample B Female 11.9
Sample C Male 11.9
Sample D Male 7.9
Periaqueductal gray
nTPM: 29.4
Samples: 3

Max nTPM: 37.2
Min nTPM: 18.3
Sample B Female 18.3
Sample C Male 32.7
Sample D Male 37.2
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 33.0
Min nTPM: 10.2
Sample A Female 11.0
Sample B Female 33.0
Sample C Male 14.8
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 23.1
Sample A Male 26.2
Sample B Male 23.1
Sample C Female 25.8
Sample D Female 24.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68632643 Antisense, RP_050125_01_H12, Mouse strain C57BL/6J (56 days, male) 0.2

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