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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
83.0
nTPM
HPA Brain:
57.1
nTPM
GTEx:
83.0
nTPM
FANTOM5:
96.0
Scaled Tags Per Million
Mouse:
64.2
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
57.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 34.7
2586
Male, age 75, left hemisphere
47.4
2828
Female, age 72, unknown
38.6
2666
Male, age 74, left hemisphere
36.4
1870
Female, age 42, unknown
36.1
1833
Male, age 53, unknown
34.8
1827
Male, age 72, unknown
34.6
2219
Male, age 76, both hemispheres
34.5
2411
Female, age 72, unknown
31.5
1830
Male, age 51, unknown
31.4
2019
Male, age 18, unknown
21.6
Dorsal raphe nucleus nTPM: 52.3
2047
Male, age 72, unknown
68.0
2016
Female, age 72, unknown
54.7
2298
Female, age 72, unknown
52.9
1828
Male, age 53, unknown
46.8
2750
Male, age 76, both hemispheres
39.2
Inferior colliculus nTPM: 43.7
2849
Male, age 72, unknown
51.8
1890
Male, age 53, unknown
45.1
1848
Female, age 42, unknown
41.0
2097
Female, age 72, unknown
36.8
Median raphe nucleus nTPM: 46.0
2220
Male, age 76, midline
46.0
Periaquaductal grey, anterior nTPM: 54.5
1947
Male, age 18, unknown
69.4
1795
Male, age 51, unknown
58.5
2502
Female, age 75, unknown
35.6
Periaquaductal grey, dorsal nTPM: 54.2
1840
Male, age 53, unknown
66.4
2850
Male, age 76, both hemispheres
66.3
2464
Female, age 72, unknown
43.3
1831
Male, age 72, unknown
41.0
Periaquaductal grey, lateral nTPM: 57.1
2140
Male, age 76, both hemispheres
62.2
2053
Male, age 18, unknown
57.8
2272
Male, age 74, both hemispheres
51.2
Pretectal area nTPM: 42.4
2273
Male, age 74, both hemispheres
59.6
2825
Male, age 18, unknown
57.3
2224
Female, age 72, unknown
55.1
2667
Female, age 75, unknown
52.8
2407
Male, age 75, both hemispheres
48.1
2316
Male, age 76, right hemisphere
37.5
1944
Female, age 72, unknown
35.4
1816
Male, age 51, unknown
33.6
1815
Male, age 53, unknown
32.0
1817
Female, age 42, unknown
31.0
2007
Male, age 72, unknown
23.5
Red nucleus nTPM: 34.1
2725
Female, age 75, unknown
42.3
2227
Male, age 72, unknown
37.9
2769
Male, age 72, unknown
37.7
2503
Female, age 72, unknown
36.9
2823
Male, age 76, right hemisphere
36.0
1865
Male, age 51, unknown
34.6
1954
Female, age 42, unknown
34.5
2584
Male, age 75, left hemisphere
33.7
1821
Female, age 72, unknown
33.3
1904
Male, age 53, unknown
33.0
2588
Male, age 74, left hemisphere
29.4
2785
Male, age 18, unknown
19.7
Substantia nigra nTPM: 36.8
2699
Male, age 18, unknown
55.4
2665
Male, age 74, both hemispheres
43.7
1851
Male, age 51, unknown
37.9
2583
Male, age 75, right hemisphere
37.5
1916
Female, age 42, unknown
36.0
2241
Male, age 72, unknown
35.0
1889
Female, age 72, unknown
32.6
2590
Female, age 75, unknown
31.2
1941
Male, age 53, unknown
30.0
2409
Female, age 72, unknown
28.9
Superior colliculus nTPM: 37.5
2664
Male, age 75, both hemispheres
52.8
1995
Male, age 72, unknown
42.2
2668
Female, age 75, unknown
38.8
1839
Male, age 51, unknown
38.6
1796
Male, age 53, unknown
36.0
2587
Male, age 74, left hemisphere
34.2
2261
Male, age 18, unknown
33.8
1913
Female, age 42, unknown
33.3
2087
Female, age 72, unknown
32.7
1895
Male, age 76, right hemisphere
32.3
Ventral tegmental area nTPM: 41.7
2021
Male, age 53, unknown
54.2
1915
Female, age 42, unknown
44.3
1942
Male, age 51, unknown
43.3
2223
Female, age 72, unknown
39.4
2218
Male, age 76, both hemispheres
35.1
2410
Female, age 72, unknown
34.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
83.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 83.0
Samples: 139
Max nTPM: 181.5
Min nTPM: 21.2
Std nTPM: 28.7
Median nTPM: 81.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
181.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
168.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
150.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
147.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
144.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
141.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
139.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
138.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
135.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
132.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
130.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
129.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
128.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
128.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
128.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
117.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
117.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
116.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
115.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
111.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
110.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
109.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
109.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
106.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
105.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
105.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
105.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
104.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
104.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
101.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
101.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
100.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
99.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
99.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
96.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
96.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
93.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
92.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
92.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
92.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
89.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
89.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
88.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
88.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
87.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
87.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
87.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
87.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
86.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
86.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
86.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
86.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
85.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
85.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
85.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
85.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
84.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
84.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
84.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
83.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
83.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
83.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
82.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
82.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
82.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
82.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
82.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
82.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
82.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
81.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
81.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
81.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
81.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
80.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
79.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
79.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
79.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
78.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
77.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
77.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
76.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
76.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
76.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
74.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
74.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
74.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
73.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
73.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
72.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
72.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
72.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
71.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
71.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
71.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
71.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
71.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
70.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
70.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
70.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
68.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
68.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
68.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
67.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
65.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
65.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
64.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
64.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
63.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
63.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
62.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
61.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
59.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
59.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
58.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
57.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
56.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
56.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
56.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
55.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
54.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
54.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
54.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
53.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
52.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
46.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
44.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
43.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
42.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
42.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
42.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
41.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
40.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
39.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
39.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
36.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
31.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
28.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
26.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
21.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
64.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 64.2
Samples: 4
Max nTPM: 71.8
Min nTPM: 57.8
Sample A
Male
62.2
Sample B
Male
57.8
Sample C
Female
64.8
Sample D
Female
71.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.